Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.79■□□□□ 0.12
PTPN4P29074 WT1-AS_2.1-201ENST00000613208 137 ntBASIC15.79■□□□□ 0.12
PTPN4P29074 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.79■□□□□ 0.12
PTPN4P29074 AP001350.2-201ENST00000625104 1094 ntBASIC15.79■□□□□ 0.12
PTPN4P29074 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
PTPN4P29074 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN4P29074 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN4P29074 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN4P29074 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.79■□□□□ 0.12
PTPN4P29074 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN4P29074 AC005622.1-201ENST00000636801 1703 ntBASIC15.79■□□□□ 0.12
PTPN4P29074 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.79■□□□□ 0.12
PTPN4P29074 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.79■□□□□ 0.12
PTPN4P29074 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN4P29074 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN4P29074 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC15.79■□□□□ 0.12
PTPN4P29074 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN4P29074 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN4P29074 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.79■□□□□ 0.12
PTPN4P29074 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
PTPN4P29074 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
PTPN4P29074 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 UXT-AS1-201ENST00000590504 1525 ntBASIC15.78■□□□□ 0.12
PTPN4P29074 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.78■□□□□ 0.12
PTPN4P29074 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.78■□□□□ 0.12
PTPN4P29074 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
PTPN4P29074 WASH6P-202ENST00000359512 1437 ntBASIC15.78■□□□□ 0.12
PTPN4P29074 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC15.78■□□□□ 0.12
PTPN4P29074 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC15.78■□□□□ 0.12
PTPN4P29074 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC15.78■□□□□ 0.12
PTPN4P29074 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
PTPN4P29074 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
PTPN4P29074 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
PTPN4P29074 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
PTPN4P29074 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.78■□□□□ 0.12
PTPN4P29074 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC15.78■□□□□ 0.12
PTPN4P29074 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.78■□□□□ 0.12
PTPN4P29074 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC15.78■□□□□ 0.12
PTPN4P29074 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC15.78■□□□□ 0.12
PTPN4P29074 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC15.78■□□□□ 0.12
PTPN4P29074 AC069262.1-201ENST00000539058 672 ntBASIC15.78■□□□□ 0.12
PTPN4P29074 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.78■□□□□ 0.12
PTPN4P29074 DUX4L27-201ENST00000554796 1261 ntBASIC15.78■□□□□ 0.12
PTPN4P29074 AC087641.1-201ENST00000557561 1021 ntBASIC15.78■□□□□ 0.12
PTPN4P29074 LINC01225-203ENST00000563550 1244 ntBASIC15.78■□□□□ 0.12
PTPN4P29074 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.78■□□□□ 0.12
PTPN4P29074 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.78■□□□□ 0.12
PTPN4P29074 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
PTPN4P29074 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
PTPN4P29074 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
PTPN4P29074 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 MROH4P-201ENST00000431302 1578 ntBASIC15.78■□□□□ 0.12
PTPN4P29074 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
PTPN4P29074 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC15.78■□□□□ 0.12
PTPN4P29074 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
PTPN4P29074 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.78■□□□□ 0.12
PTPN4P29074 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.78■□□□□ 0.12
PTPN4P29074 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PTPN4P29074 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.77■□□□□ 0.12
PTPN4P29074 AC005840.4-201ENST00000541242 2494 ntBASIC15.77■□□□□ 0.12
PTPN4P29074 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PTPN4P29074 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PTPN4P29074 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC15.77■□□□□ 0.12
PTPN4P29074 AC131009.4-201ENST00000624048 1740 ntBASIC15.77■□□□□ 0.12
PTPN4P29074 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PTPN4P29074 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PTPN4P29074 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.77■□□□□ 0.12
PTPN4P29074 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PTPN4P29074 PCDHA3-202ENST00000532566 4594 ntBASIC15.77■□□□□ 0.12
PTPN4P29074 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
PTPN4P29074 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
PTPN4P29074 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
PTPN4P29074 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.77■□□□□ 0.12
PTPN4P29074 RNU1-129P-201ENST00000384064 167 ntBASIC15.77■□□□□ 0.12
PTPN4P29074 PMS2P4-201ENST00000412466 1052 ntBASIC15.77■□□□□ 0.12
PTPN4P29074 GPS2P2-201ENST00000430745 888 ntBASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms