Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
USF1P22415 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC13.32□□□□□ -0.28
USF1P22415 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
USF1P22415 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 TNIK-204ENST00000436636 6970 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC13.31□□□□□ -0.28
USF1P22415 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC13.31□□□□□ -0.28
USF1P22415 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC13.31□□□□□ -0.28
USF1P22415 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
USF1P22415 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC13.31□□□□□ -0.28
USF1P22415 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
USF1P22415 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC13.31□□□□□ -0.28
USF1P22415 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC13.31□□□□□ -0.28
USF1P22415 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC13.31□□□□□ -0.28
USF1P22415 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
USF1P22415 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC13.31□□□□□ -0.28
USF1P22415 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC13.31□□□□□ -0.28
USF1P22415 TMEM14DP-201ENST00000422205 345 ntBASIC13.31□□□□□ -0.28
USF1P22415 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC13.31□□□□□ -0.28
USF1P22415 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC13.31□□□□□ -0.28
USF1P22415 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC13.31□□□□□ -0.28
USF1P22415 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC13.31□□□□□ -0.28
USF1P22415 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 ORC6-206ENST00000568364 888 ntTSL 5 BASIC13.31□□□□□ -0.28
USF1P22415 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC13.31□□□□□ -0.28
USF1P22415 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC13.31□□□□□ -0.28
USF1P22415 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC13.31□□□□□ -0.28
USF1P22415 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
USF1P22415 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC13.31□□□□□ -0.28
USF1P22415 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC13.31□□□□□ -0.28
USF1P22415 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC13.31□□□□□ -0.28
USF1P22415 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC13.31□□□□□ -0.28
USF1P22415 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 Z97205.2-201ENST00000564697 1639 ntBASIC13.31□□□□□ -0.28
USF1P22415 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC13.31□□□□□ -0.28
USF1P22415 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC13.31□□□□□ -0.28
USF1P22415 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
USF1P22415 AL596087.1-201ENST00000400979 1969 ntBASIC13.31□□□□□ -0.28
USF1P22415 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
USF1P22415 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC13.3□□□□□ -0.28
USF1P22415 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC13.3□□□□□ -0.28
USF1P22415 CDC14C-201ENST00000428251 1719 ntBASIC13.3□□□□□ -0.28
USF1P22415 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC13.3□□□□□ -0.28
USF1P22415 AC007950.2-201ENST00000615045 2347 ntBASIC13.3□□□□□ -0.28
USF1P22415 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC13.3□□□□□ -0.28
USF1P22415 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC13.3□□□□□ -0.28
USF1P22415 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC13.3□□□□□ -0.28
USF1P22415 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
USF1P22415 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
USF1P22415 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
USF1P22415 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC13.3□□□□□ -0.28
USF1P22415 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC13.3□□□□□ -0.28
USF1P22415 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
USF1P22415 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
USF1P22415 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
USF1P22415 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
USF1P22415 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
USF1P22415 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
USF1P22415 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
USF1P22415 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
USF1P22415 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
USF1P22415 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
USF1P22415 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
USF1P22415 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC13.3□□□□□ -0.28
USF1P22415 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC13.3□□□□□ -0.28
USF1P22415 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC13.3□□□□□ -0.28
USF1P22415 KRT223P-202ENST00000449164 1292 ntBASIC13.3□□□□□ -0.28
USF1P22415 RN7SL399P-201ENST00000471648 279 ntBASIC13.3□□□□□ -0.28
USF1P22415 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC13.3□□□□□ -0.28
USF1P22415 AC243562.2-201ENST00000561247 970 ntBASIC13.3□□□□□ -0.28
USF1P22415 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC13.3□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms