Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A3P12111 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC15.8■□□□□ 0.12
COL6A3P12111 AP000593.2-201ENST00000542775 1433 ntBASIC15.8■□□□□ 0.12
COL6A3P12111 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A3P12111 THYN1-203ENST00000392594 943 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A3P12111 HNRNPA1P25-201ENST00000422644 937 ntBASIC15.79■□□□□ 0.12
COL6A3P12111 AC012506.1-201ENST00000423706 525 ntTSL 4 BASIC15.79■□□□□ 0.12
COL6A3P12111 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC15.79■□□□□ 0.12
COL6A3P12111 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC15.79■□□□□ 0.12
COL6A3P12111 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC15.79■□□□□ 0.12
COL6A3P12111 SPAG5-AS1-204ENST00000556050 871 ntTSL 2 BASIC15.79■□□□□ 0.12
COL6A3P12111 AC009163.5-202ENST00000571737 466 ntTSL 3 BASIC15.79■□□□□ 0.12
COL6A3P12111 AC007952.4-201ENST00000573866 637 ntBASIC15.79■□□□□ 0.12
COL6A3P12111 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A3P12111 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC15.79■□□□□ 0.12
COL6A3P12111 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
COL6A3P12111 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A3P12111 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A3P12111 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A3P12111 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC15.79■□□□□ 0.12
COL6A3P12111 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A3P12111 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
COL6A3P12111 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
COL6A3P12111 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A3P12111 AL807761.2-201ENST00000422849 729 ntBASIC15.79■□□□□ 0.12
COL6A3P12111 KLF2P1-201ENST00000447438 1042 ntBASIC15.79■□□□□ 0.12
COL6A3P12111 FTH1P22-201ENST00000456305 520 ntBASIC15.79■□□□□ 0.12
COL6A3P12111 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC15.79■□□□□ 0.12
COL6A3P12111 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A3P12111 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC15.79■□□□□ 0.12
COL6A3P12111 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A3P12111 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A3P12111 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A3P12111 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.79■□□□□ 0.12
COL6A3P12111 AL359258.3-201ENST00000622910 2331 ntBASIC15.79■□□□□ 0.12
COL6A3P12111 AL139384.1-201ENST00000612143 3047 ntBASIC15.79■□□□□ 0.12
COL6A3P12111 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A3P12111 CSHL1-201ENST00000259003 739 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A3P12111 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.79■□□□□ 0.12
COL6A3P12111 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC15.79■□□□□ 0.12
COL6A3P12111 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC15.79■□□□□ 0.12
COL6A3P12111 CSHL1-206ENST00000450719 973 ntTSL 2 BASIC15.79■□□□□ 0.12
COL6A3P12111 SCARNA12-201ENST00000459155 270 ntBASIC15.79■□□□□ 0.12
COL6A3P12111 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC15.79■□□□□ 0.12
COL6A3P12111 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.79■□□□□ 0.12
COL6A3P12111 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A3P12111 AAMDC-210ENST00000532481 690 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A3P12111 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC15.79■□□□□ 0.12
COL6A3P12111 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL6A3P12111 AL008718.2-201ENST00000609206 1313 ntBASIC15.79■□□□□ 0.12
COL6A3P12111 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC15.78■□□□□ 0.12
COL6A3P12111 KRT8P31-201ENST00000504812 1408 ntBASIC15.78■□□□□ 0.12
COL6A3P12111 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.78■□□□□ 0.12
COL6A3P12111 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A3P12111 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A3P12111 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
COL6A3P12111 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
COL6A3P12111 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
COL6A3P12111 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC15.78■□□□□ 0.12
COL6A3P12111 MIR1301-201ENST00000408518 82 ntBASIC15.78■□□□□ 0.12
COL6A3P12111 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC15.78■□□□□ 0.12
COL6A3P12111 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC15.78■□□□□ 0.12
COL6A3P12111 SNRPF-205ENST00000553192 552 ntTSL 4 BASIC15.78■□□□□ 0.12
COL6A3P12111 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC15.78■□□□□ 0.12
COL6A3P12111 PAX4-207ENST00000611453 1235 ntTSL 5 BASIC15.78■□□□□ 0.12
COL6A3P12111 PHF23-213ENST00000613632 850 ntTSL 5 BASIC15.78■□□□□ 0.12
COL6A3P12111 NF1P11-201ENST00000621292 1282 ntBASIC15.78■□□□□ 0.12
COL6A3P12111 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC15.78■□□□□ 0.12
COL6A3P12111 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.78■□□□□ 0.12
COL6A3P12111 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A3P12111 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC15.78■□□□□ 0.12
COL6A3P12111 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
COL6A3P12111 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
COL6A3P12111 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A3P12111 AL121949.3-201ENST00000406684 385 ntBASIC15.78■□□□□ 0.12
COL6A3P12111 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC15.78■□□□□ 0.12
COL6A3P12111 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC15.78■□□□□ 0.12
COL6A3P12111 DLG4-206ENST00000485100 1004 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A3P12111 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC15.78■□□□□ 0.12
COL6A3P12111 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC15.78■□□□□ 0.12
COL6A3P12111 AC140113.1-201ENST00000603467 169 ntBASIC15.78■□□□□ 0.12
COL6A3P12111 AC006483.2-201ENST00000609813 515 ntBASIC15.78■□□□□ 0.12
COL6A3P12111 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A3P12111 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A3P12111 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.78■□□□□ 0.12
COL6A3P12111 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC15.78■□□□□ 0.12
COL6A3P12111 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
COL6A3P12111 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.78■□□□□ 0.12
COL6A3P12111 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A3P12111 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
COL6A3P12111 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A3P12111 TSPY25P-201ENST00000429463 745 ntBASIC15.77■□□□□ 0.12
COL6A3P12111 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A3P12111 ANKRD2-204ENST00000455090 1072 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A3P12111 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC15.77■□□□□ 0.12
COL6A3P12111 USB1-205ENST00000561743 1135 ntTSL 3 BASIC15.77■□□□□ 0.12
COL6A3P12111 DERL2-206ENST00000572834 589 ntTSL 3 BASIC15.77■□□□□ 0.12
COL6A3P12111 CYP4F36P-201ENST00000589193 186 ntBASIC15.77■□□□□ 0.12
COL6A3P12111 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
COL6A3P12111 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC15.77■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms