Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 AC092850.2-201ENST00000623821 2697 ntBASIC16.43■□□□□ 0.22
APOEP02649 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
APOEP02649 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
APOEP02649 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
APOEP02649 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
APOEP02649 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
APOEP02649 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.43■□□□□ 0.22
APOEP02649 AP003680.1-201ENST00000598970 3660 ntBASIC16.43■□□□□ 0.22
APOEP02649 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.43■□□□□ 0.22
APOEP02649 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
APOEP02649 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
APOEP02649 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
APOEP02649 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC16.43■□□□□ 0.22
APOEP02649 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
APOEP02649 DBET-201ENST00000630918 3363 ntBASIC16.43■□□□□ 0.22
APOEP02649 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
APOEP02649 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
APOEP02649 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
APOEP02649 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
APOEP02649 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.42■□□□□ 0.22
APOEP02649 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
APOEP02649 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
APOEP02649 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
APOEP02649 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC16.42■□□□□ 0.22
APOEP02649 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
APOEP02649 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
APOEP02649 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
APOEP02649 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
APOEP02649 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC16.42■□□□□ 0.22
APOEP02649 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
APOEP02649 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC16.42■□□□□ 0.22
APOEP02649 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.42■□□□□ 0.22
APOEP02649 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC16.42■□□□□ 0.22
APOEP02649 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
APOEP02649 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
APOEP02649 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
APOEP02649 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
APOEP02649 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
APOEP02649 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.42■□□□□ 0.22
APOEP02649 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC16.42■□□□□ 0.22
APOEP02649 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
APOEP02649 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC16.42■□□□□ 0.22
APOEP02649 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
APOEP02649 DOC2GP-202ENST00000514950 1163 ntBASIC16.42■□□□□ 0.22
APOEP02649 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.42■□□□□ 0.22
APOEP02649 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.42■□□□□ 0.22
APOEP02649 SRD5A3P1-201ENST00000603021 949 ntBASIC16.42■□□□□ 0.22
APOEP02649 AC097359.3-201ENST00000603982 1210 ntBASIC16.42■□□□□ 0.22
APOEP02649 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
APOEP02649 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
APOEP02649 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
APOEP02649 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
APOEP02649 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
APOEP02649 AL607033.1-201ENST00000623900 1599 ntBASIC16.42■□□□□ 0.22
APOEP02649 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
APOEP02649 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
APOEP02649 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
APOEP02649 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
APOEP02649 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
APOEP02649 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.41■□□□□ 0.22
APOEP02649 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC16.41■□□□□ 0.22
APOEP02649 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC16.41■□□□□ 0.22
APOEP02649 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.41■□□□□ 0.22
APOEP02649 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
APOEP02649 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
APOEP02649 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.41■□□□□ 0.22
APOEP02649 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
APOEP02649 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
APOEP02649 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
APOEP02649 DKFZP434H168-201ENST00000567381 1905 ntBASIC16.41■□□□□ 0.22
APOEP02649 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
APOEP02649 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
APOEP02649 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
APOEP02649 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
APOEP02649 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
APOEP02649 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
APOEP02649 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.41■□□□□ 0.22
APOEP02649 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
APOEP02649 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
APOEP02649 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
APOEP02649 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.41■□□□□ 0.22
APOEP02649 SPTLC1P1-201ENST00000447199 261 ntBASIC16.41■□□□□ 0.22
APOEP02649 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.41■□□□□ 0.22
APOEP02649 SPDYE18-201ENST00000510091 1050 ntBASIC16.41■□□□□ 0.22
APOEP02649 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.41■□□□□ 0.22
APOEP02649 SLED1-202ENST00000512051 380 ntBASIC16.41■□□□□ 0.22
APOEP02649 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC16.41■□□□□ 0.22
APOEP02649 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.41■□□□□ 0.22
APOEP02649 POLD4-211ENST00000539074 714 ntTSL 3 BASIC16.41■□□□□ 0.22
APOEP02649 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.41■□□□□ 0.22
APOEP02649 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
APOEP02649 AC092337.1-201ENST00000568699 1129 ntBASIC16.41■□□□□ 0.22
APOEP02649 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.41■□□□□ 0.22
APOEP02649 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
APOEP02649 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.41■□□□□ 0.22
APOEP02649 LINC01115-203ENST00000606068 577 ntBASIC16.41■□□□□ 0.22
APOEP02649 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
APOEP02649 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
APOEP02649 AC067930.6-201ENST00000623257 4947 ntBASIC16.41■□□□□ 0.22
APOEP02649 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms