Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.99■□□□□ 0.31
RNF40O75150 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.99■□□□□ 0.31
RNF40O75150 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RNF40O75150 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
RNF40O75150 MPDU1-223ENST00000582151 728 ntBASIC16.99■□□□□ 0.31
RNF40O75150 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC16.99■□□□□ 0.31
RNF40O75150 TRIM45-201ENST00000256649 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RNF40O75150 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC16.99■□□□□ 0.31
RNF40O75150 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
RNF40O75150 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
RNF40O75150 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RNF40O75150 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
RNF40O75150 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RNF40O75150 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.99■□□□□ 0.31
RNF40O75150 RASSF5-201ENST00000577571 3496 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
RNF40O75150 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
RNF40O75150 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RNF40O75150 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
RNF40O75150 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
RNF40O75150 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
RNF40O75150 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.99■□□□□ 0.31
RNF40O75150 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
RNF40O75150 LINC01101-201ENST00000622953 1884 ntBASIC16.99■□□□□ 0.31
RNF40O75150 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC16.99■□□□□ 0.31
RNF40O75150 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
RNF40O75150 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
RNF40O75150 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RNF40O75150 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RNF40O75150 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC16.98■□□□□ 0.31
RNF40O75150 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
RNF40O75150 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.98■□□□□ 0.31
RNF40O75150 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
RNF40O75150 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
RNF40O75150 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
RNF40O75150 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
RNF40O75150 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
RNF40O75150 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.98■□□□□ 0.31
RNF40O75150 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC16.98■□□□□ 0.31
RNF40O75150 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC16.98■□□□□ 0.31
RNF40O75150 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC16.98■□□□□ 0.31
RNF40O75150 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.98■□□□□ 0.31
RNF40O75150 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC16.98■□□□□ 0.31
RNF40O75150 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC16.98■□□□□ 0.31
RNF40O75150 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC16.98■□□□□ 0.31
RNF40O75150 AC004890.2-204ENST00000481968 304 ntBASIC16.98■□□□□ 0.31
RNF40O75150 AC027369.6-201ENST00000525520 931 ntBASIC16.98■□□□□ 0.31
RNF40O75150 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.98■□□□□ 0.31
RNF40O75150 AC092068.1-201ENST00000592525 454 ntTSL 2 BASIC16.98■□□□□ 0.31
RNF40O75150 CECR7-204ENST00000609932 568 ntTSL 2 BASIC16.98■□□□□ 0.31
RNF40O75150 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.98■□□□□ 0.31
RNF40O75150 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RNF40O75150 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
RNF40O75150 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
RNF40O75150 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RNF40O75150 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RNF40O75150 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.98■□□□□ 0.31
RNF40O75150 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RNF40O75150 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
RNF40O75150 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RNF40O75150 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RNF40O75150 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
RNF40O75150 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.98■□□□□ 0.31
RNF40O75150 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC16.98■□□□□ 0.31
RNF40O75150 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RNF40O75150 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RNF40O75150 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
RNF40O75150 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
RNF40O75150 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC16.98■□□□□ 0.31
RNF40O75150 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.98■□□□□ 0.31
RNF40O75150 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
RNF40O75150 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
RNF40O75150 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RNF40O75150 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
RNF40O75150 AC138517.2-201ENST00000637503 2594 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
RNF40O75150 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RNF40O75150 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF40O75150 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF40O75150 AL031731.1-201ENST00000642131 2094 ntBASIC16.97■□□□□ 0.31
RNF40O75150 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF40O75150 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
RNF40O75150 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
RNF40O75150 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
RNF40O75150 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF40O75150 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC16.97■□□□□ 0.31
RNF40O75150 CRB3P1-201ENST00000449338 276 ntBASIC16.97■□□□□ 0.31
RNF40O75150 GAPDHP21-201ENST00000450301 1010 ntBASIC16.97■□□□□ 0.31
RNF40O75150 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
RNF40O75150 SERBP1P5-201ENST00000510079 1181 ntBASIC16.97■□□□□ 0.31
RNF40O75150 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.97■□□□□ 0.31
RNF40O75150 AP005018.1-201ENST00000525475 301 ntBASIC16.97■□□□□ 0.31
RNF40O75150 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC16.97■□□□□ 0.31
RNF40O75150 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.97■□□□□ 0.31
RNF40O75150 AC073592.8-201ENST00000624126 511 ntBASIC16.97■□□□□ 0.31
RNF40O75150 CFTRP2-201ENST00000634304 199 ntBASIC16.97■□□□□ 0.31
RNF40O75150 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF40O75150 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.97■□□□□ 0.31
RNF40O75150 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
RNF40O75150 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
RNF40O75150 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.97■□□□□ 0.31
RNF40O75150 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms