Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 BCRP2-202ENST00000447763 634 ntBASIC12.61□□□□□ -0.39
HOXA3O43365 KLF2P4-201ENST00000451959 1225 ntBASIC12.61□□□□□ -0.39
HOXA3O43365 BNIP3P42-201ENST00000454982 569 ntBASIC12.61□□□□□ -0.39
HOXA3O43365 BCRP6-201ENST00000510112 632 ntBASIC12.61□□□□□ -0.39
HOXA3O43365 BCRP7-201ENST00000511549 544 ntBASIC12.61□□□□□ -0.39
HOXA3O43365 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC12.61□□□□□ -0.39
HOXA3O43365 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC12.61□□□□□ -0.39
HOXA3O43365 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC12.61□□□□□ -0.39
HOXA3O43365 ENPP7P5-201ENST00000541031 1031 ntBASIC12.61□□□□□ -0.39
HOXA3O43365 PTP4A1P2-201ENST00000546033 454 ntBASIC12.61□□□□□ -0.39
HOXA3O43365 HNRNPUP1-201ENST00000554987 333 ntBASIC12.61□□□□□ -0.39
HOXA3O43365 RPL28-207ENST00000558815 616 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXA3O43365 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXA3O43365 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC12.61□□□□□ -0.39
HOXA3O43365 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC12.61□□□□□ -0.39
HOXA3O43365 BNIP3P29-201ENST00000598302 571 ntBASIC12.61□□□□□ -0.39
HOXA3O43365 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXA3O43365 AC011447.5-201ENST00000616168 564 ntBASIC12.61□□□□□ -0.39
HOXA3O43365 AL033527.4-201ENST00000641026 673 ntBASIC12.61□□□□□ -0.39
HOXA3O43365 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC12.61□□□□□ -0.39
HOXA3O43365 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 PDIA3P1-201ENST00000471856 1510 ntBASIC12.61□□□□□ -0.39
HOXA3O43365 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC12.61□□□□□ -0.39
HOXA3O43365 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC12.61□□□□□ -0.39
HOXA3O43365 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC12.61□□□□□ -0.39
HOXA3O43365 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC12.61□□□□□ -0.39
HOXA3O43365 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXA3O43365 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC12.61□□□□□ -0.39
HOXA3O43365 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC12.61□□□□□ -0.39
HOXA3O43365 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC12.61□□□□□ -0.39
HOXA3O43365 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC12.6□□□□□ -0.39
HOXA3O43365 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC12.6□□□□□ -0.39
HOXA3O43365 AL607033.1-201ENST00000623900 1599 ntBASIC12.6□□□□□ -0.39
HOXA3O43365 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC12.6□□□□□ -0.39
HOXA3O43365 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
HOXA3O43365 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
HOXA3O43365 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC12.6□□□□□ -0.39
HOXA3O43365 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
HOXA3O43365 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC12.6□□□□□ -0.39
HOXA3O43365 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC12.6□□□□□ -0.39
HOXA3O43365 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 AGGF1P2-201ENST00000426656 2106 ntBASIC12.6□□□□□ -0.39
HOXA3O43365 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC12.6□□□□□ -0.39
HOXA3O43365 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC12.6□□□□□ -0.39
HOXA3O43365 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC12.6□□□□□ -0.39
HOXA3O43365 VDAC1P7-201ENST00000462417 847 ntBASIC12.6□□□□□ -0.39
HOXA3O43365 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC12.6□□□□□ -0.39
HOXA3O43365 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 AC092658.1-201ENST00000505836 891 ntBASIC12.6□□□□□ -0.39
HOXA3O43365 AC068587.3-201ENST00000526613 355 ntBASIC12.6□□□□□ -0.39
HOXA3O43365 AC120045.2-201ENST00000567334 178 ntBASIC12.6□□□□□ -0.39
HOXA3O43365 AC124283.3-201ENST00000570869 594 ntBASIC12.6□□□□□ -0.39
HOXA3O43365 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC12.6□□□□□ -0.39
HOXA3O43365 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC12.6□□□□□ -0.39
HOXA3O43365 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC12.6□□□□□ -0.39
HOXA3O43365 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 WNT11-204ENST00000621122 789 ntTSL 5 BASIC12.6□□□□□ -0.39
HOXA3O43365 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC12.6□□□□□ -0.39
HOXA3O43365 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC12.6□□□□□ -0.39
HOXA3O43365 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC12.6□□□□□ -0.39
HOXA3O43365 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC12.6□□□□□ -0.39
HOXA3O43365 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC12.6□□□□□ -0.39
HOXA3O43365 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC12.6□□□□□ -0.39
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms