Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MSH4O15457 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
MSH4O15457 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC17.45■□□□□ 0.38
MSH4O15457 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH4O15457 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH4O15457 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC17.45■□□□□ 0.38
MSH4O15457 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.45■□□□□ 0.38
MSH4O15457 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH4O15457 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.45■□□□□ 0.38
MSH4O15457 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC17.45■□□□□ 0.38
MSH4O15457 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MSH4O15457 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MSH4O15457 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MSH4O15457 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH4O15457 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC17.45■□□□□ 0.38
MSH4O15457 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC17.45■□□□□ 0.38
MSH4O15457 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
MSH4O15457 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH4O15457 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MSH4O15457 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC17.45■□□□□ 0.38
MSH4O15457 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MSH4O15457 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
MSH4O15457 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC17.45■□□□□ 0.38
MSH4O15457 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.45■□□□□ 0.38
MSH4O15457 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC17.45■□□□□ 0.38
MSH4O15457 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC17.45■□□□□ 0.38
MSH4O15457 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC17.45■□□□□ 0.38
MSH4O15457 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC17.45■□□□□ 0.38
MSH4O15457 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC17.45■□□□□ 0.38
MSH4O15457 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MSH4O15457 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC17.45■□□□□ 0.38
MSH4O15457 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH4O15457 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH4O15457 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
MSH4O15457 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH4O15457 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH4O15457 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH4O15457 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH4O15457 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
MSH4O15457 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.45■□□□□ 0.38
MSH4O15457 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC17.45■□□□□ 0.38
MSH4O15457 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC17.45■□□□□ 0.38
MSH4O15457 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
MSH4O15457 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH4O15457 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH4O15457 CICP11-201ENST00000434745 2827 ntBASIC17.44■□□□□ 0.38
MSH4O15457 TMBIM7P-203ENST00000641617 1718 ntBASIC17.44■□□□□ 0.38
MSH4O15457 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
MSH4O15457 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH4O15457 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH4O15457 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC17.44■□□□□ 0.38
MSH4O15457 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC17.44■□□□□ 0.38
MSH4O15457 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
MSH4O15457 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
MSH4O15457 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC17.44■□□□□ 0.38
MSH4O15457 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH4O15457 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH4O15457 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
MSH4O15457 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
MSH4O15457 NME2-201ENST00000393183 568 ntTSL 2 BASIC17.44■□□□□ 0.38
MSH4O15457 ACTG1P3-201ENST00000431775 1114 ntBASIC17.44■□□□□ 0.38
MSH4O15457 TTTY23B-201ENST00000442790 549 ntBASIC17.44■□□□□ 0.38
MSH4O15457 AC007389.4-201ENST00000454674 793 ntBASIC17.44■□□□□ 0.38
MSH4O15457 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
MSH4O15457 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH4O15457 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC17.44■□□□□ 0.38
MSH4O15457 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC17.44■□□□□ 0.38
MSH4O15457 MIR5189-201ENST00000577370 114 ntBASIC17.44■□□□□ 0.38
MSH4O15457 IFT20-206ENST00000578122 834 ntTSL 2 BASIC17.44■□□□□ 0.38
MSH4O15457 IFT20-208ENST00000578985 831 ntTSL 3 BASIC17.44■□□□□ 0.38
MSH4O15457 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC17.44■□□□□ 0.38
MSH4O15457 AC239800.4-201ENST00000603712 296 ntBASIC17.44■□□□□ 0.38
MSH4O15457 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC17.44■□□□□ 0.38
MSH4O15457 HADH-212ENST00000638621 741 ntTSL 5 BASIC17.44■□□□□ 0.38
MSH4O15457 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH4O15457 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
MSH4O15457 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH4O15457 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
MSH4O15457 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
MSH4O15457 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
MSH4O15457 C18orf15-201ENST00000623680 2534 ntBASIC17.44■□□□□ 0.38
MSH4O15457 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.44■□□□□ 0.38
MSH4O15457 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
MSH4O15457 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
MSH4O15457 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC17.43■□□□□ 0.38
MSH4O15457 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC17.43■□□□□ 0.38
MSH4O15457 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
MSH4O15457 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms