Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC26.04■■□□□ 1.76
CUX2O14529 JPT2-203ENST00000382711 894 ntTSL 4 BASIC26.04■■□□□ 1.76
CUX2O14529 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC26.04■■□□□ 1.76
CUX2O14529 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC26.04■■□□□ 1.76
CUX2O14529 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CUX2O14529 AF111169.3-201ENST00000553991 756 ntTSL 5 BASIC26.04■■□□□ 1.76
CUX2O14529 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC26.04■■□□□ 1.76
CUX2O14529 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC26.04■■□□□ 1.76
CUX2O14529 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC26.04■■□□□ 1.76
CUX2O14529 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC26.04■■□□□ 1.76
CUX2O14529 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC26.04■■□□□ 1.76
CUX2O14529 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC26.04■■□□□ 1.76
CUX2O14529 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CUX2O14529 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
CUX2O14529 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC26.04■■□□□ 1.76
CUX2O14529 CEP83-AS1-201ENST00000623122 2482 ntBASIC26.04■■□□□ 1.76
CUX2O14529 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CUX2O14529 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CUX2O14529 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC26.04■■□□□ 1.76
CUX2O14529 ME2P1-201ENST00000426028 1970 ntBASIC26.04■■□□□ 1.76
CUX2O14529 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CUX2O14529 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC26.04■■□□□ 1.76
CUX2O14529 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC26.04■■□□□ 1.76
CUX2O14529 AC012213.1-201ENST00000517376 722 ntTSL 3 BASIC26.04■■□□□ 1.76
CUX2O14529 BANF1-205ENST00000527348 670 ntAPPRIS P1 TSL 3 BASIC26.04■■□□□ 1.76
CUX2O14529 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
CUX2O14529 SELENOW-202ENST00000593892 550 ntAPPRIS P1 TSL 3 BASIC26.04■■□□□ 1.76
CUX2O14529 AC006548.2-201ENST00000605217 529 ntBASIC26.04■■□□□ 1.76
CUX2O14529 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC26.04■■□□□ 1.76
CUX2O14529 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC26.04■■□□□ 1.76
CUX2O14529 FAM90A7P-201ENST00000382628 1395 ntBASIC26.03■■□□□ 1.76
CUX2O14529 FAM90A23P-201ENST00000400136 1395 ntBASIC26.03■■□□□ 1.76
CUX2O14529 FAM90A21P-201ENST00000510875 1396 ntBASIC26.03■■□□□ 1.76
CUX2O14529 FAM90A15P-201ENST00000514465 1395 ntBASIC26.03■■□□□ 1.76
CUX2O14529 FAM90A6P-201ENST00000515148 1394 ntBASIC26.03■■□□□ 1.76
CUX2O14529 FAM90A16P-201ENST00000526662 1395 ntBASIC26.03■■□□□ 1.76
CUX2O14529 FAM90A9P-201ENST00000527940 1395 ntBASIC26.03■■□□□ 1.76
CUX2O14529 FAM90A5P-201ENST00000528738 1395 ntBASIC26.03■■□□□ 1.76
CUX2O14529 FAM90A14P-201ENST00000530386 1395 ntBASIC26.03■■□□□ 1.76
CUX2O14529 FAM90A13P-201ENST00000534703 1395 ntBASIC26.03■■□□□ 1.76
CUX2O14529 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CUX2O14529 AC018892.3-201ENST00000623986 2499 ntBASIC26.03■■□□□ 1.76
CUX2O14529 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC26.03■■□□□ 1.76
CUX2O14529 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CUX2O14529 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC26.03■■□□□ 1.76
CUX2O14529 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC26.03■■□□□ 1.76
CUX2O14529 AC026320.2-201ENST00000434379 478 ntBASIC26.03■■□□□ 1.76
CUX2O14529 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC26.03■■□□□ 1.76
CUX2O14529 TCL1A-205ENST00000555202 717 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CUX2O14529 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC26.03■■□□□ 1.76
CUX2O14529 AL451007.2-201ENST00000632004 563 ntBASIC26.03■■□□□ 1.76
CUX2O14529 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC26.03■■□□□ 1.76
CUX2O14529 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CUX2O14529 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CUX2O14529 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CUX2O14529 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CUX2O14529 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC26.02■■□□□ 1.76
CUX2O14529 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
CUX2O14529 CSF2RA-219ENST00000501036 1622 ntTSL 2 BASIC26.02■■□□□ 1.76
CUX2O14529 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC26.02■■□□□ 1.76
CUX2O14529 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC26.02■■□□□ 1.76
CUX2O14529 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC26.02■■□□□ 1.76
CUX2O14529 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CUX2O14529 TOMM20L-201ENST00000360945 620 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CUX2O14529 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
CUX2O14529 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC26.02■■□□□ 1.76
CUX2O14529 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC26.02■■□□□ 1.76
CUX2O14529 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CUX2O14529 ORAOV1P1-201ENST00000503108 395 ntBASIC26.02■■□□□ 1.76
CUX2O14529 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC26.02■■□□□ 1.76
CUX2O14529 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC26.02■■□□□ 1.76
CUX2O14529 PHBP15-201ENST00000574228 665 ntBASIC26.02■■□□□ 1.76
CUX2O14529 AC012073.1-201ENST00000606114 1108 ntBASIC26.02■■□□□ 1.76
CUX2O14529 AC005041.3-201ENST00000606287 649 ntBASIC26.02■■□□□ 1.76
CUX2O14529 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC26.02■■□□□ 1.76
CUX2O14529 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC26.02■■□□□ 1.76
CUX2O14529 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC26.02■■□□□ 1.76
CUX2O14529 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CUX2O14529 ALOX12P2-203ENST00000570921 1945 ntBASIC26.02■■□□□ 1.76
CUX2O14529 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
CUX2O14529 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.76
CUX2O14529 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC26.01■■□□□ 1.76
CUX2O14529 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CUX2O14529 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CUX2O14529 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CUX2O14529 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CUX2O14529 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CUX2O14529 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC26.01■■□□□ 1.75
CUX2O14529 C18orf21-202ENST00000333234 958 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
CUX2O14529 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CUX2O14529 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC26.01■■□□□ 1.75
CUX2O14529 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.75
CUX2O14529 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
CUX2O14529 USP4-203ENST00000415188 1454 ntTSL 3 BASIC26.01■■□□□ 1.75
CUX2O14529 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC26.01■■□□□ 1.75
CUX2O14529 AL135901.1-201ENST00000451812 333 ntBASIC26.01■■□□□ 1.75
CUX2O14529 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC26.01■■□□□ 1.75
CUX2O14529 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
CUX2O14529 RPS5-204ENST00000598098 536 ntTSL 2 BASIC26.01■■□□□ 1.75
CUX2O14529 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC26.01■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms