Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 TP73-209ENST00000603362 1668 ntTSL 5 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC15□□□□□ -0.01
PCDHGA1Q9Y5H4 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 KRTAP10-13P-201ENST00000412914 571 ntBASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 RPSAP36-202ENST00000494591 1261 ntBASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 PARP8-206ENST00000503665 572 ntTSL 4 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 NAT9-222ENST00000583476 583 ntTSL 3 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 BX539320.1-201ENST00000623759 877 ntBASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 SLIT1-204ENST00000371070 4564 ntTSL 5 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
PCDHGA1Q9Y5H4 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 MIR1202-201ENST00000408529 83 ntBASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 PTPA-218ENST00000435132 618 ntTSL 2 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 ACTG1P17-201ENST00000558391 1119 ntBASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 HIST2H2AA4-201ENST00000607355 564 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 FOS-202ENST00000535987 1402 ntTSL 2 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 AC106886.4-201ENST00000623557 2502 ntBASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
PCDHGA1Q9Y5H4 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms