Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 STX1A-203ENST00000395155 783 ntTSL 2 BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 BNIP3P42-201ENST00000454982 569 ntBASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 MDH2-205ENST00000461263 648 ntTSL 2 BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 SUOX-214ENST00000551841 906 ntTSL 3 BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 APRT-204ENST00000563655 709 ntTSL 5 BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 BNIP3P29-201ENST00000598302 571 ntBASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 AC011447.5-201ENST00000616168 564 ntBASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 SNX12-206ENST00000622259 661 ntTSL 5 BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 CLK3P2-201ENST00000427566 1453 ntBASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PDZRN3Q9UPQ7 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 USP32P1-208ENST00000506594 1164 ntBASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 AL365330.1-201ENST00000607459 531 ntBASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
PDZRN3Q9UPQ7 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
PDZRN3Q9UPQ7 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 TUBB1P2-201ENST00000422712 1306 ntBASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 TUBB1P1-201ENST00000503144 1300 ntBASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 ANKRD19P-201ENST00000338192 862 ntBASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 NME6-203ENST00000415644 849 ntTSL 2 BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 RAD18-204ENST00000418463 563 ntTSL 4 BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 RAD18-205ENST00000421052 582 ntTSL 3 BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PDZRN3Q9UPQ7 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms