Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 AC107373.2-201ENST00000607735 490 ntBASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 TSPY26P-202ENST00000565928 3884 ntBASIC13.89□□□□□ -0.19
CLCF1Q9UBD9 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 TKT-202ENST00000423516 2075 ntTSL 2 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 TEX30-203ENST00000376022 828 ntTSL 2 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 SUN1-204ENST00000403868 978 ntTSL 2 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 HIST1H2BPS3-201ENST00000419683 341 ntBASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 GAPDHP40-201ENST00000505218 1006 ntBASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 TDH-203ENST00000531764 1110 ntBASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 CLUHP6-201ENST00000580789 941 ntBASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 IFT20-216ENST00000588477 774 ntTSL 5 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 BTNL10-201ENST00000595971 695 ntBASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 AC233724.13-201ENST00000598383 410 ntBASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 AC017083.2-201ENST00000608069 979 ntBASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 AL008721.1-201ENST00000609964 604 ntBASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 AC005252.2-201ENST00000624630 1141 ntBASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 POLL-217ENST00000628479 1953 ntTSL 5 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 AL513523.2-202ENST00000427283 2040 ntBASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
CLCF1Q9UBD9 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLCF1Q9UBD9 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CLCF1Q9UBD9 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC13.87□□□□□ -0.19
CLCF1Q9UBD9 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLCF1Q9UBD9 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLCF1Q9UBD9 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLCF1Q9UBD9 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
CLCF1Q9UBD9 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLCF1Q9UBD9 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC13.87□□□□□ -0.19
CLCF1Q9UBD9 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLCF1Q9UBD9 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLCF1Q9UBD9 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLCF1Q9UBD9 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CLCF1Q9UBD9 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC13.87□□□□□ -0.19
CLCF1Q9UBD9 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC13.87□□□□□ -0.19
CLCF1Q9UBD9 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC13.87□□□□□ -0.19
CLCF1Q9UBD9 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC13.87□□□□□ -0.19
CLCF1Q9UBD9 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CLCF1Q9UBD9 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CLCF1Q9UBD9 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CLCF1Q9UBD9 BANP-204ENST00000393208 2283 ntTSL 2 BASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms