Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LRFN1Q9P244 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
LRFN1Q9P244 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LRFN1Q9P244 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.38□□□□□ -0.11
LRFN1Q9P244 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LRFN1Q9P244 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LRFN1Q9P244 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LRFN1Q9P244 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
LRFN1Q9P244 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.38□□□□□ -0.11
LRFN1Q9P244 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LRFN1Q9P244 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
LRFN1Q9P244 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC14.38□□□□□ -0.11
LRFN1Q9P244 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LRFN1Q9P244 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.38□□□□□ -0.11
LRFN1Q9P244 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LRFN1Q9P244 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC14.38□□□□□ -0.11
LRFN1Q9P244 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC14.38□□□□□ -0.11
LRFN1Q9P244 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC14.38□□□□□ -0.11
LRFN1Q9P244 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LRFN1Q9P244 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
LRFN1Q9P244 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
LRFN1Q9P244 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC14.38□□□□□ -0.11
LRFN1Q9P244 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.38□□□□□ -0.11
LRFN1Q9P244 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 CCDC50-201ENST00000392455 8429 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 APOA1-205ENST00000375329 927 ntTSL 2 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 C1QBPP1-201ENST00000400117 770 ntBASIC14.37□□□□□ -0.11
LRFN1Q9P244 AC079776.1-201ENST00000401540 1152 ntBASIC14.37□□□□□ -0.11
LRFN1Q9P244 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 HLA-V-201ENST00000429037 534 ntBASIC14.37□□□□□ -0.11
LRFN1Q9P244 AC234783.1-201ENST00000441761 496 ntBASIC14.37□□□□□ -0.11
LRFN1Q9P244 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 ENPP7P5-201ENST00000541031 1031 ntBASIC14.37□□□□□ -0.11
LRFN1Q9P244 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 MIR6752-201ENST00000618442 71 ntBASIC14.37□□□□□ -0.11
LRFN1Q9P244 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
LRFN1Q9P244 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 FRMD6-AS1-201ENST00000617151 2229 ntBASIC14.37□□□□□ -0.11
LRFN1Q9P244 PCDHB19P-201ENST00000570871 2371 ntBASIC14.37□□□□□ -0.11
LRFN1Q9P244 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
LRFN1Q9P244 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LRFN1Q9P244 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LRFN1Q9P244 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LRFN1Q9P244 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LRFN1Q9P244 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.36□□□□□ -0.11
LRFN1Q9P244 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
LRFN1Q9P244 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LRFN1Q9P244 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.36□□□□□ -0.11
LRFN1Q9P244 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.36□□□□□ -0.11
LRFN1Q9P244 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LRFN1Q9P244 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
LRFN1Q9P244 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC14.36□□□□□ -0.11
LRFN1Q9P244 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
LRFN1Q9P244 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LRFN1Q9P244 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
LRFN1Q9P244 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC14.36□□□□□ -0.11
LRFN1Q9P244 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
LRFN1Q9P244 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
LRFN1Q9P244 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms