Protein–RNA interactions for Protein: Q9NUP1

BLOC1S4, Biogenesis of lysosome-related organelles complex 1 subunit 4, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BLOC1S4Q9NUP1 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
BLOC1S4Q9NUP1 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
BLOC1S4Q9NUP1 MROH4P-201ENST00000431302 1578 ntBASIC17.33■□□□□ 0.37
BLOC1S4Q9NUP1 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
BLOC1S4Q9NUP1 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC17.33■□□□□ 0.37
BLOC1S4Q9NUP1 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
BLOC1S4Q9NUP1 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 AC104457.1-201ENST00000401024 814 ntBASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 TSPY16P-201ENST00000449843 468 ntBASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 PFN2-205ENST00000461868 613 ntTSL 2 BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 TCAF2P1-201ENST00000291129 2421 ntBASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
BLOC1S4Q9NUP1 AC006058.4-201ENST00000624016 1670 ntBASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 RERG-209ENST00000546331 1383 ntTSL 2 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 GHSR-202ENST00000427970 912 ntBASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 AL662799.1-202ENST00000614205 422 ntBASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 AL645728.2-202ENST00000641679 227 ntBASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
BLOC1S4Q9NUP1 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 GSN-215ENST00000545652 2428 ntTSL 2 BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 AC103702.1-201ENST00000548801 2630 ntBASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC17.31■□□□□ 0.36
BLOC1S4Q9NUP1 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC17.31■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms