Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 THTPA-204ENST00000554970 569 ntTSL 4 BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 THTPA-206ENST00000556015 535 ntTSL 3 BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 AC096734.2-201ENST00000562054 433 ntBASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 SLC35E2B-205ENST00000617444 6283 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 POR-201ENST00000394893 2532 ntTSL 5 BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 FAM198B-201ENST00000296530 4985 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
CHMP1AQ9HD42 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 AC015656.1-201ENST00000624209 3578 ntBASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 SEPT9-244ENST00000592420 2588 ntTSL 2 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 RER1-203ENST00000378513 3000 ntTSL 3 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 FALEC-201ENST00000416894 566 ntTSL 3 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 FAAHP1-202ENST00000446499 1238 ntBASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 HCG4B-203ENST00000450128 991 ntBASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 RNA5SP415-201ENST00000517246 115 ntBASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 RN7SL510P-201ENST00000581311 263 ntBASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 AL691432.3-201ENST00000621860 400 ntBASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 AC116407.3-201ENST00000623905 1129 ntBASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 AC073439.1-201ENST00000624121 1774 ntBASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 CICP23-201ENST00000605013 2741 ntBASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 DNAJC22-202ENST00000549441 4412 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 SFI1-229ENST00000540643 4226 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 TMCC3-201ENST00000261226 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 USP3-204ENST00000540797 5474 ntTSL 2 BASIC13.57□□□□□ -0.24
CHMP1AQ9HD42 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 LINC00528-201ENST00000600723 2160 ntBASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 AC011477.6-201ENST00000604980 1927 ntBASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 AP001282.1-201ENST00000531301 1499 ntBASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC13.56□□□□□ -0.24
CHMP1AQ9HD42 PRKCB-201ENST00000303531 7969 ntAPPRIS P4 TSL 1 (best) BASIC13.56□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms