Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 ZFAND4-203ENST00000374366 3821 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 HLA-H-201ENST00000383620 1096 ntBASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 CCDC74BP1-201ENST00000508880 1123 ntBASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 AC093520.2-201ENST00000561830 333 ntBASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 AC022145.2-201ENST00000598203 171 ntBASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
TRIM56Q9BRZ2 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 TCAF2P1-201ENST00000291129 2421 ntBASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 AC004987.2-201ENST00000395959 1148 ntBASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 MIR3687-2-201ENST00000577708 61 ntBASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 MIR3687-1-201ENST00000614492 61 ntBASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
TRIM56Q9BRZ2 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 ATP11B-201ENST00000323116 7325 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 PALLD-215ENST00000512127 2958 ntTSL 2 BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 CEND1P1-201ENST00000451006 455 ntBASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 GATB-205ENST00000508611 605 ntTSL 2 BASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 BANF1P1-201ENST00000553684 263 ntBASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 RARRES2P9-201ENST00000565168 469 ntBASIC16.03■□□□□ 0.16
TRIM56Q9BRZ2 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms