Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 TP53TG3HP-202ENST00000569755 579 ntBASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 AC004461.2-201ENST00000629517 803 ntBASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 AL391825.1-201ENST00000457671 1364 ntBASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CLIP3Q96DZ5 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 GAPDHP21-201ENST00000450301 1010 ntBASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 AC245100.5-201ENST00000452108 331 ntBASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 SPDYE18-201ENST00000510091 1050 ntBASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 TPRX2P-201ENST00000535362 881 ntBASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 AL596325.1-201ENST00000563991 1082 ntBASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 AP003680.1-201ENST00000598970 3660 ntBASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.21■□□□□ 0.03
CLIP3Q96DZ5 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CLIP3Q96DZ5 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CLIP3Q96DZ5 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
CLIP3Q96DZ5 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CLIP3Q96DZ5 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
CLIP3Q96DZ5 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC15.21■□□□□ 0.02
CLIP3Q96DZ5 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 AL691432.1-201ENST00000596308 1422 ntBASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 AC004987.2-201ENST00000395959 1148 ntBASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 KRT17P7-201ENST00000451704 1104 ntBASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 CD81-207ENST00000481687 890 ntTSL 2 BASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 API5-211ENST00000534695 560 ntTSL 5 BASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 TIMM17BP1-201ENST00000545713 516 ntBASIC15.2■□□□□ 0.02
CLIP3Q96DZ5 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms