Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC011491.1-203ENST00000637688 543 ntBASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 Z97180.1-201ENST00000445173 988 ntBASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 RN7SL8P-201ENST00000461771 266 ntBASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 MIR3147-201ENST00000577811 66 ntBASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 IRF3-215ENST00000596822 823 ntTSL 3 BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 ENPP7P14-201ENST00000621765 1040 ntBASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 PCBP2-OT1-201ENST00000634357 590 ntBASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 PCDH8P1-201ENST00000428983 2773 ntBASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CCDC88AQ3V6T2 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 C6orf136-202ENST00000376471 614 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 AL008707.1-201ENST00000422498 534 ntBASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 AC093151.3-202ENST00000445073 709 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 AC106794.1-201ENST00000506935 792 ntBASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 AL138799.1-201ENST00000448213 1675 ntBASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 ODF4-201ENST00000328248 1156 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 CD8B2-202ENST00000417670 633 ntBASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 AL596276.2-201ENST00000447525 331 ntBASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 AL161670.2-201ENST00000557650 1227 ntBASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 AC068587.8-201ENST00000641239 219 ntBASIC18.77■□□□□ 0.6
CCDC88AQ3V6T2 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC88AQ3V6T2 AC004899.1-201ENST00000424687 1714 ntBASIC18.77■□□□□ 0.59
CCDC88AQ3V6T2 P2RX5-208ENST00000552050 1536 ntTSL 2 BASIC18.77■□□□□ 0.59
CCDC88AQ3V6T2 ACE-203ENST00000413513 2237 ntTSL 2 BASIC18.77■□□□□ 0.59
CCDC88AQ3V6T2 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC88AQ3V6T2 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
CCDC88AQ3V6T2 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC18.77■□□□□ 0.59
CCDC88AQ3V6T2 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CCDC88AQ3V6T2 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms