Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 AC025048.3-201ENST00000590609 569 ntBASIC16.32■□□□□ 0.2
CDH6P55285 AC005702.4-201ENST00000618393 416 ntBASIC16.32■□□□□ 0.2
CDH6P55285 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CDH6P55285 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH6P55285 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CDH6P55285 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.31■□□□□ 0.2
CDH6P55285 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH6P55285 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH6P55285 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CDH6P55285 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC16.31■□□□□ 0.2
CDH6P55285 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH6P55285 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CDH6P55285 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.31■□□□□ 0.2
CDH6P55285 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDH6P55285 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.31■□□□□ 0.2
CDH6P55285 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.31■□□□□ 0.2
CDH6P55285 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH6P55285 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CDH6P55285 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH6P55285 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDH6P55285 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
CDH6P55285 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.31■□□□□ 0.2
CDH6P55285 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.31■□□□□ 0.2
CDH6P55285 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH6P55285 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CDH6P55285 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC16.31■□□□□ 0.2
CDH6P55285 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.31■□□□□ 0.2
CDH6P55285 AC140878.1-201ENST00000565277 250 ntBASIC16.31■□□□□ 0.2
CDH6P55285 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.31■□□□□ 0.2
CDH6P55285 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC16.31■□□□□ 0.2
CDH6P55285 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.31■□□□□ 0.2
CDH6P55285 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.31■□□□□ 0.2
CDH6P55285 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CDH6P55285 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.31■□□□□ 0.2
CDH6P55285 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH6P55285 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH6P55285 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH6P55285 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH6P55285 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.31■□□□□ 0.2
CDH6P55285 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC16.31■□□□□ 0.2
CDH6P55285 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH6P55285 CAMKK2-211ENST00000538733 5175 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CDH6P55285 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.31■□□□□ 0.2
CDH6P55285 Z97205.2-201ENST00000564697 1639 ntBASIC16.3■□□□□ 0.2
CDH6P55285 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC16.3■□□□□ 0.2
CDH6P55285 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
CDH6P55285 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CDH6P55285 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH6P55285 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH6P55285 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH6P55285 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH6P55285 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH6P55285 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.3■□□□□ 0.2
CDH6P55285 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CDH6P55285 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH6P55285 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH6P55285 LY6G6C-201ENST00000375819 992 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH6P55285 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
CDH6P55285 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.3■□□□□ 0.2
CDH6P55285 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.3■□□□□ 0.2
CDH6P55285 USP40-206ENST00000443711 628 ntTSL 2 BASIC16.3■□□□□ 0.2
CDH6P55285 RN7SL618P-201ENST00000477850 296 ntBASIC16.3■□□□□ 0.2
CDH6P55285 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC16.3■□□□□ 0.2
CDH6P55285 AC027369.6-201ENST00000525520 931 ntBASIC16.3■□□□□ 0.2
CDH6P55285 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH6P55285 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.3■□□□□ 0.2
CDH6P55285 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC16.3■□□□□ 0.2
CDH6P55285 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH6P55285 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC16.3■□□□□ 0.2
CDH6P55285 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH6P55285 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH6P55285 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC16.3■□□□□ 0.2
CDH6P55285 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.3■□□□□ 0.2
CDH6P55285 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH6P55285 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH6P55285 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC16.3■□□□□ 0.2
CDH6P55285 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH6P55285 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CDH6P55285 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH6P55285 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC16.3■□□□□ 0.2
CDH6P55285 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CDH6P55285 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.3■□□□□ 0.2
CDH6P55285 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH6P55285 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH6P55285 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC16.3■□□□□ 0.2
CDH6P55285 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CDH6P55285 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CDH6P55285 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.3■□□□□ 0.2
CDH6P55285 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH6P55285 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.29■□□□□ 0.2
CDH6P55285 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH6P55285 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH6P55285 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
CDH6P55285 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC16.29■□□□□ 0.2
CDH6P55285 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.29■□□□□ 0.2
CDH6P55285 KRT8P44-201ENST00000441609 1350 ntBASIC16.29■□□□□ 0.2
CDH6P55285 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.29■□□□□ 0.2
CDH6P55285 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC16.29■□□□□ 0.2
CDH6P55285 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
CDH6P55285 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms