Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC073150.1-201ENST00000450406 1084 ntBASIC21.3■■□□□ 1
MSH6P52701 PPOX-204ENST00000462866 473 ntTSL 5 BASIC21.3■■□□□ 1
MSH6P52701 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC21.3■■□□□ 1
MSH6P52701 AC141586.1-203ENST00000567242 366 ntBASIC21.3■■□□□ 1
MSH6P52701 AC079336.4-201ENST00000584219 408 ntTSL 2 BASIC21.3■■□□□ 1
MSH6P52701 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC21.3■■□□□ 1
MSH6P52701 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC21.3■■□□□ 1
MSH6P52701 GMFG-209ENST00000600322 622 ntTSL 5 BASIC21.3■■□□□ 1
MSH6P52701 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
MSH6P52701 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC21.3■■□□□ 1
MSH6P52701 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC21.3■■□□□ 1
MSH6P52701 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
MSH6P52701 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
MSH6P52701 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
MSH6P52701 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC21.3■■□□□ 1
MSH6P52701 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
MSH6P52701 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
MSH6P52701 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
MSH6P52701 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH6P52701 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC21.29■■□□□ 1
MSH6P52701 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
MSH6P52701 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC21.29■■□□□ 1
MSH6P52701 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
MSH6P52701 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH6P52701 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH6P52701 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH6P52701 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC21.29■■□□□ 1
MSH6P52701 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH6P52701 HNRNPA1P41-201ENST00000397777 928 ntBASIC21.29■■□□□ 1
MSH6P52701 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH6P52701 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC21.29■■□□□ 1
MSH6P52701 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC21.29■■□□□ 1
MSH6P52701 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC21.29■■□□□ 1
MSH6P52701 NAP1L6-202ENST00000641404 1222 ntBASIC21.29■■□□□ 1
MSH6P52701 AC011676.5-201ENST00000624864 2660 ntBASIC21.29■■□□□ 1
MSH6P52701 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
MSH6P52701 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH6P52701 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC21.29■■□□□ 1
MSH6P52701 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH6P52701 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH6P52701 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH6P52701 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC21.29■■□□□ 1
MSH6P52701 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
MSH6P52701 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
MSH6P52701 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
MSH6P52701 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH6P52701 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
MSH6P52701 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH6P52701 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
MSH6P52701 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
MSH6P52701 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH6P52701 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
MSH6P52701 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
MSH6P52701 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC21.28■■□□□ 1
MSH6P52701 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH6P52701 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC21.28■■□□□ 1
MSH6P52701 BET1L-203ENST00000382762 2819 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH6P52701 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
MSH6P52701 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC21.28■■□□□ 1
MSH6P52701 AC133961.1-201ENST00000503085 762 ntTSL 3 BASIC21.28■■□□□ 1
MSH6P52701 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC21.28■■□□□ 1
MSH6P52701 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC21.28■■□□□ 1
MSH6P52701 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC21.28■■□□□ 1
MSH6P52701 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC21.28■■□□□ 1
MSH6P52701 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC21.28■■□□□ 1
MSH6P52701 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC21.28■■□□□ 1
MSH6P52701 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC21.28■■□□□ 1
MSH6P52701 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC21.28■■□□□ 1
MSH6P52701 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
MSH6P52701 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC21.28■■□□□ 1
MSH6P52701 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
MSH6P52701 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC21.28■■□□□ 1
MSH6P52701 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
MSH6P52701 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC21.27■■□□□ 1
MSH6P52701 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC21.27■■□□□ 1
MSH6P52701 AL158070.2-201ENST00000623713 1621 ntBASIC21.27■■□□□ 1
MSH6P52701 FOSB-213ENST00000615753 1468 ntTSL 1 (best) BASIC21.27■■□□□ 1
MSH6P52701 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC21.27■■□□□ 1
MSH6P52701 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
MSH6P52701 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC21.27■■□□□ 1
MSH6P52701 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC21.27■■□□□ 1
MSH6P52701 RCC2P8-201ENST00000502779 1035 ntBASIC21.27■■□□□ 1
MSH6P52701 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC21.27■■□□□ 1
MSH6P52701 AC009041.1-201ENST00000565401 544 ntTSL 4 BASIC21.27■■□□□ 1
MSH6P52701 MIR4783-201ENST00000580343 82 ntBASIC21.27■■□□□ 1
MSH6P52701 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
MSH6P52701 AGGF1P2-201ENST00000426656 2106 ntBASIC21.27■■□□□ 1
MSH6P52701 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC21.27■■□□□ 1
MSH6P52701 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC21.27■■□□□ 1
MSH6P52701 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
MSH6P52701 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
MSH6P52701 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH6P52701 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH6P52701 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
MSH6P52701 MAEA-207ENST00000505177 1340 ntTSL 5 BASIC21.26■□□□□ 0.99
MSH6P52701 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC21.26■□□□□ 0.99
MSH6P52701 AC074138.1-201ENST00000611182 1303 ntBASIC21.26■□□□□ 0.99
MSH6P52701 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC21.26■□□□□ 0.99
MSH6P52701 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC21.26■□□□□ 0.99
MSH6P52701 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms