Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LIG3P49916 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIG3P49916 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC16.57■□□□□ 0.24
LIG3P49916 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
LIG3P49916 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIG3P49916 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIG3P49916 AC005252.3-201ENST00000623855 2258 ntBASIC16.57■□□□□ 0.24
LIG3P49916 LINC02447-202ENST00000501888 2146 ntBASIC16.57■□□□□ 0.24
LIG3P49916 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIG3P49916 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.57■□□□□ 0.24
LIG3P49916 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
LIG3P49916 LINC01101-201ENST00000622953 1884 ntBASIC16.57■□□□□ 0.24
LIG3P49916 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIG3P49916 CDC14C-201ENST00000428251 1719 ntBASIC16.57■□□□□ 0.24
LIG3P49916 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIG3P49916 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16.57■□□□□ 0.24
LIG3P49916 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.57■□□□□ 0.24
LIG3P49916 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC16.57■□□□□ 0.24
LIG3P49916 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LIG3P49916 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC16.57■□□□□ 0.24
LIG3P49916 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.57■□□□□ 0.24
LIG3P49916 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC16.57■□□□□ 0.24
LIG3P49916 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LIG3P49916 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
LIG3P49916 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIG3P49916 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16.57■□□□□ 0.24
LIG3P49916 KRT18P32-201ENST00000424695 1287 ntBASIC16.57■□□□□ 0.24
LIG3P49916 FAM58DP-201ENST00000428076 619 ntBASIC16.57■□□□□ 0.24
LIG3P49916 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.57■□□□□ 0.24
LIG3P49916 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LIG3P49916 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.57■□□□□ 0.24
LIG3P49916 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.57■□□□□ 0.24
LIG3P49916 AL138918.1-201ENST00000568306 659 ntBASIC16.57■□□□□ 0.24
LIG3P49916 RPS15-207ENST00000591032 550 ntTSL 3 BASIC16.57■□□□□ 0.24
LIG3P49916 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.57■□□□□ 0.24
LIG3P49916 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.57■□□□□ 0.24
LIG3P49916 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.57■□□□□ 0.24
LIG3P49916 AC009093.7-201ENST00000623853 1223 ntBASIC16.57■□□□□ 0.24
LIG3P49916 AC008267.7-201ENST00000624570 1194 ntBASIC16.57■□□□□ 0.24
LIG3P49916 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LIG3P49916 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIG3P49916 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
LIG3P49916 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIG3P49916 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
LIG3P49916 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIG3P49916 ST20-AS1-201ENST00000560255 4223 ntBASIC16.57■□□□□ 0.24
LIG3P49916 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC16.57■□□□□ 0.24
LIG3P49916 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIG3P49916 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC16.57■□□□□ 0.24
LIG3P49916 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
LIG3P49916 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC16.57■□□□□ 0.24
LIG3P49916 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
LIG3P49916 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
LIG3P49916 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC16.56■□□□□ 0.24
LIG3P49916 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
LIG3P49916 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.56■□□□□ 0.24
LIG3P49916 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.56■□□□□ 0.24
LIG3P49916 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC16.56■□□□□ 0.24
LIG3P49916 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 AP003680.1-201ENST00000598970 3660 ntBASIC16.56■□□□□ 0.24
LIG3P49916 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
LIG3P49916 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC16.56■□□□□ 0.24
LIG3P49916 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC16.56■□□□□ 0.24
LIG3P49916 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC16.56■□□□□ 0.24
LIG3P49916 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
LIG3P49916 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 AC010327.5-201ENST00000586923 3061 ntBASIC16.56■□□□□ 0.24
LIG3P49916 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.56■□□□□ 0.24
LIG3P49916 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.56■□□□□ 0.24
LIG3P49916 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC16.56■□□□□ 0.24
LIG3P49916 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC16.56■□□□□ 0.24
LIG3P49916 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.56■□□□□ 0.24
LIG3P49916 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC16.56■□□□□ 0.24
LIG3P49916 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
LIG3P49916 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
LIG3P49916 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC16.56■□□□□ 0.24
LIG3P49916 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.56■□□□□ 0.24
LIG3P49916 AC004449.1-201ENST00000564240 433 ntBASIC16.56■□□□□ 0.24
LIG3P49916 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.56■□□□□ 0.24
LIG3P49916 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
LIG3P49916 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.56■□□□□ 0.24
LIG3P49916 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
LIG3P49916 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms