Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
LHX1P48742 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.5■□□□□ 0.23
LHX1P48742 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC16.5■□□□□ 0.23
LHX1P48742 TDH-203ENST00000531764 1110 ntBASIC16.5■□□□□ 0.23
LHX1P48742 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LHX1P48742 PTP4A1P2-201ENST00000546033 454 ntBASIC16.5■□□□□ 0.23
LHX1P48742 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.5■□□□□ 0.23
LHX1P48742 AC008735.3-201ENST00000596646 500 ntBASIC16.5■□□□□ 0.23
LHX1P48742 METTL26-214ENST00000614890 801 ntTSL 3 BASIC16.5■□□□□ 0.23
LHX1P48742 AL645728.2-202ENST00000641679 227 ntBASIC16.5■□□□□ 0.23
LHX1P48742 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
LHX1P48742 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LHX1P48742 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.5■□□□□ 0.23
LHX1P48742 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
LHX1P48742 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LHX1P48742 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LHX1P48742 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
LHX1P48742 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
LHX1P48742 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
LHX1P48742 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
LHX1P48742 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
LHX1P48742 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.5■□□□□ 0.23
LHX1P48742 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC16.49■□□□□ 0.23
LHX1P48742 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
LHX1P48742 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LHX1P48742 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LHX1P48742 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LHX1P48742 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LHX1P48742 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
LHX1P48742 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LHX1P48742 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
LHX1P48742 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LHX1P48742 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LHX1P48742 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.23
LHX1P48742 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LHX1P48742 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.49■□□□□ 0.23
LHX1P48742 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LHX1P48742 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.49■□□□□ 0.23
LHX1P48742 GK-202ENST00000378941 458 ntTSL 3 BASIC16.49■□□□□ 0.23
LHX1P48742 BRF1-202ENST00000379932 884 ntTSL 5 BASIC16.49■□□□□ 0.23
LHX1P48742 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LHX1P48742 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.49■□□□□ 0.23
LHX1P48742 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.49■□□□□ 0.23
LHX1P48742 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.49■□□□□ 0.23
LHX1P48742 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC16.49■□□□□ 0.23
LHX1P48742 MIR5189-201ENST00000577370 114 ntBASIC16.49■□□□□ 0.23
LHX1P48742 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.49■□□□□ 0.23
LHX1P48742 IFT20-208ENST00000578985 831 ntTSL 3 BASIC16.49■□□□□ 0.23
LHX1P48742 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC16.49■□□□□ 0.23
LHX1P48742 CLUHP6-201ENST00000580789 941 ntBASIC16.49■□□□□ 0.23
LHX1P48742 APOC4-201ENST00000591600 348 ntTSL 3 BASIC16.49■□□□□ 0.23
LHX1P48742 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC16.49■□□□□ 0.23
LHX1P48742 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.49■□□□□ 0.23
LHX1P48742 AC005252.2-201ENST00000624630 1141 ntBASIC16.49■□□□□ 0.23
LHX1P48742 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.49■□□□□ 0.23
LHX1P48742 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LHX1P48742 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
LHX1P48742 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LHX1P48742 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
LHX1P48742 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
LHX1P48742 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.49■□□□□ 0.23
LHX1P48742 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LHX1P48742 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LHX1P48742 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.48■□□□□ 0.23
LHX1P48742 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LHX1P48742 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LHX1P48742 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LHX1P48742 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LHX1P48742 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.48■□□□□ 0.23
LHX1P48742 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LHX1P48742 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
LHX1P48742 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
LHX1P48742 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
LHX1P48742 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.48■□□□□ 0.23
LHX1P48742 MXI1-205ENST00000393134 889 ntTSL 2 BASIC16.48■□□□□ 0.23
LHX1P48742 NME2-201ENST00000393183 568 ntTSL 2 BASIC16.48■□□□□ 0.23
LHX1P48742 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
LHX1P48742 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
LHX1P48742 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LHX1P48742 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LHX1P48742 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.48■□□□□ 0.23
LHX1P48742 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LHX1P48742 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC16.48■□□□□ 0.23
LHX1P48742 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
LHX1P48742 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.48■□□□□ 0.23
LHX1P48742 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC16.48■□□□□ 0.23
LHX1P48742 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC16.48■□□□□ 0.23
LHX1P48742 BTNL10-201ENST00000595971 695 ntBASIC16.48■□□□□ 0.23
LHX1P48742 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LHX1P48742 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.48■□□□□ 0.23
LHX1P48742 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.48■□□□□ 0.23
LHX1P48742 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LHX1P48742 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LHX1P48742 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
LHX1P48742 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LHX1P48742 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LHX1P48742 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LHX1P48742 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
LHX1P48742 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
LHX1P48742 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms