Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HOXC9P31274 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HOXC9P31274 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC20.46■□□□□ 0.87
HOXC9P31274 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
HOXC9P31274 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC20.45■□□□□ 0.87
HOXC9P31274 ANKRD30BP2-201ENST00000435744 1610 ntBASIC20.45■□□□□ 0.87
HOXC9P31274 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC20.45■□□□□ 0.87
HOXC9P31274 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
HOXC9P31274 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
HOXC9P31274 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
HOXC9P31274 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC9P31274 AP003680.1-201ENST00000598970 3660 ntBASIC20.45■□□□□ 0.86
HOXC9P31274 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC20.45■□□□□ 0.86
HOXC9P31274 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC9P31274 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC9P31274 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
HOXC9P31274 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
HOXC9P31274 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
HOXC9P31274 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC9P31274 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC9P31274 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC9P31274 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC9P31274 AC104457.1-201ENST00000401024 814 ntBASIC20.45■□□□□ 0.86
HOXC9P31274 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC20.45■□□□□ 0.86
HOXC9P31274 AC079178.1-201ENST00000420915 656 ntBASIC20.45■□□□□ 0.86
HOXC9P31274 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC20.45■□□□□ 0.86
HOXC9P31274 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC20.45■□□□□ 0.86
HOXC9P31274 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC20.45■□□□□ 0.86
HOXC9P31274 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC20.45■□□□□ 0.86
HOXC9P31274 AL391280.1-201ENST00000506969 1062 ntBASIC20.45■□□□□ 0.86
HOXC9P31274 NEU3-202ENST00000526068 431 ntTSL 2 BASIC20.45■□□□□ 0.86
HOXC9P31274 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC20.45■□□□□ 0.86
HOXC9P31274 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC20.45■□□□□ 0.86
HOXC9P31274 RN7SL713P-201ENST00000582127 302 ntBASIC20.45■□□□□ 0.86
HOXC9P31274 PPY2P-201ENST00000582808 702 ntBASIC20.45■□□□□ 0.86
HOXC9P31274 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC9P31274 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC20.45■□□□□ 0.86
HOXC9P31274 OR10B1P-201ENST00000601666 907 ntBASIC20.45■□□□□ 0.86
HOXC9P31274 AL451050.2-201ENST00000606967 682 ntBASIC20.45■□□□□ 0.86
HOXC9P31274 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC20.45■□□□□ 0.86
HOXC9P31274 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
HOXC9P31274 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC9P31274 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC20.45■□□□□ 0.86
HOXC9P31274 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
HOXC9P31274 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC9P31274 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC20.45■□□□□ 0.86
HOXC9P31274 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC9P31274 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HOXC9P31274 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
HOXC9P31274 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC20.44■□□□□ 0.86
HOXC9P31274 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC20.44■□□□□ 0.86
HOXC9P31274 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC9P31274 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC9P31274 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC9P31274 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
HOXC9P31274 SLC25A24P2-201ENST00000415059 510 ntBASIC20.44■□□□□ 0.86
HOXC9P31274 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC20.44■□□□□ 0.86
HOXC9P31274 RGS5-214ENST00000429865 754 ntTSL 3 BASIC20.44■□□□□ 0.86
HOXC9P31274 HLA-K-203ENST00000430151 1046 ntBASIC20.44■□□□□ 0.86
HOXC9P31274 FNTAP2-201ENST00000430308 634 ntBASIC20.44■□□□□ 0.86
HOXC9P31274 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC20.44■□□□□ 0.86
HOXC9P31274 PTPA-218ENST00000435132 618 ntTSL 2 BASIC20.44■□□□□ 0.86
HOXC9P31274 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC20.44■□□□□ 0.86
HOXC9P31274 AC022616.1-201ENST00000518688 554 ntBASIC20.44■□□□□ 0.86
HOXC9P31274 AC106820.3-201ENST00000561653 397 ntBASIC20.44■□□□□ 0.86
HOXC9P31274 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC20.44■□□□□ 0.86
HOXC9P31274 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
HOXC9P31274 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC20.44■□□□□ 0.86
HOXC9P31274 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC20.44■□□□□ 0.86
HOXC9P31274 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC20.44■□□□□ 0.86
HOXC9P31274 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
HOXC9P31274 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC20.44■□□□□ 0.86
HOXC9P31274 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC20.44■□□□□ 0.86
HOXC9P31274 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
HOXC9P31274 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC9P31274 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
HOXC9P31274 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
HOXC9P31274 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
HOXC9P31274 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC9P31274 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
HOXC9P31274 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
HOXC9P31274 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC20.43■□□□□ 0.86
HOXC9P31274 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC20.43■□□□□ 0.86
HOXC9P31274 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC20.43■□□□□ 0.86
HOXC9P31274 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC20.43■□□□□ 0.86
HOXC9P31274 REEP1-202ENST00000453231 940 ntTSL 2 BASIC20.43■□□□□ 0.86
HOXC9P31274 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC9P31274 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC20.43■□□□□ 0.86
HOXC9P31274 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC20.43■□□□□ 0.86
HOXC9P31274 AC004466.1-201ENST00000599515 1080 ntBASIC20.43■□□□□ 0.86
HOXC9P31274 AC244157.2-201ENST00000616239 1006 ntBASIC20.43■□□□□ 0.86
HOXC9P31274 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC9P31274 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC9P31274 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC9P31274 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC9P31274 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC9P31274 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HOXC9P31274 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
HOXC9P31274 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC20.43■□□□□ 0.86
HOXC9P31274 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms