Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDH3P22223 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
CDH3P22223 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDH3P22223 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDH3P22223 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDH3P22223 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CDH3P22223 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC15.44■□□□□ 0.06
CDH3P22223 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.44■□□□□ 0.06
CDH3P22223 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CDH3P22223 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
CDH3P22223 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CDH3P22223 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC15.44■□□□□ 0.06
CDH3P22223 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
CDH3P22223 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
CDH3P22223 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH3P22223 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH3P22223 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH3P22223 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC15.43■□□□□ 0.06
CDH3P22223 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CDH3P22223 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
CDH3P22223 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC15.43■□□□□ 0.06
CDH3P22223 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH3P22223 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.43■□□□□ 0.06
CDH3P22223 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
CDH3P22223 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
CDH3P22223 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH3P22223 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.43■□□□□ 0.06
CDH3P22223 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH3P22223 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH3P22223 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH3P22223 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
CDH3P22223 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH3P22223 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH3P22223 AL035633.1-201ENST00000406139 838 ntBASIC15.43■□□□□ 0.06
CDH3P22223 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC15.43■□□□□ 0.06
CDH3P22223 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.43■□□□□ 0.06
CDH3P22223 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC15.43■□□□□ 0.06
CDH3P22223 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC15.43■□□□□ 0.06
CDH3P22223 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CDH3P22223 AC044860.1-202ENST00000559481 777 ntBASIC15.43■□□□□ 0.06
CDH3P22223 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH3P22223 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC15.43■□□□□ 0.06
CDH3P22223 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.43■□□□□ 0.06
CDH3P22223 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC15.43■□□□□ 0.06
CDH3P22223 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
CDH3P22223 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC15.43■□□□□ 0.06
CDH3P22223 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
CDH3P22223 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.43■□□□□ 0.06
CDH3P22223 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
CDH3P22223 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.43■□□□□ 0.06
CDH3P22223 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH3P22223 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.43■□□□□ 0.06
CDH3P22223 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.43■□□□□ 0.06
CDH3P22223 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH3P22223 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH3P22223 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.43■□□□□ 0.06
CDH3P22223 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH3P22223 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
CDH3P22223 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CDH3P22223 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH3P22223 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
CDH3P22223 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
CDH3P22223 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CDH3P22223 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH3P22223 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CDH3P22223 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH3P22223 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC15.42■□□□□ 0.06
CDH3P22223 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CDH3P22223 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH3P22223 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH3P22223 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CDH3P22223 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CDH3P22223 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH3P22223 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC15.42■□□□□ 0.06
CDH3P22223 AC067930.6-201ENST00000623257 4947 ntBASIC15.42■□□□□ 0.06
CDH3P22223 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.42■□□□□ 0.06
CDH3P22223 BTBD7P1-201ENST00000447253 1453 ntBASIC15.42■□□□□ 0.06
CDH3P22223 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH3P22223 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
CDH3P22223 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH3P22223 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH3P22223 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
CDH3P22223 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC15.42■□□□□ 0.06
CDH3P22223 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH3P22223 FO393414.2-201ENST00000405153 598 ntBASIC15.42■□□□□ 0.06
CDH3P22223 GOLGA6L11P-201ENST00000417252 1298 ntBASIC15.42■□□□□ 0.06
CDH3P22223 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC15.42■□□□□ 0.06
CDH3P22223 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC15.42■□□□□ 0.06
CDH3P22223 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC15.42■□□□□ 0.06
CDH3P22223 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH3P22223 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH3P22223 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
CDH3P22223 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC15.42■□□□□ 0.06
CDH3P22223 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC15.42■□□□□ 0.06
CDH3P22223 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.42■□□□□ 0.06
CDH3P22223 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC15.42■□□□□ 0.06
CDH3P22223 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH3P22223 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.42■□□□□ 0.06
CDH3P22223 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
CDH3P22223 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms