Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC16.07■□□□□ 0.16
HMGA1P17096 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGA1P17096 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC16.07■□□□□ 0.16
HMGA1P17096 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGA1P17096 AL590640.2-201ENST00000457038 527 ntBASIC16.07■□□□□ 0.16
HMGA1P17096 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC16.07■□□□□ 0.16
HMGA1P17096 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGA1P17096 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC16.07■□□□□ 0.16
HMGA1P17096 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGA1P17096 SAMD11P1-201ENST00000571429 661 ntBASIC16.07■□□□□ 0.16
HMGA1P17096 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC16.07■□□□□ 0.16
HMGA1P17096 AC010328.2-201ENST00000597698 1111 ntBASIC16.07■□□□□ 0.16
HMGA1P17096 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC16.07■□□□□ 0.16
HMGA1P17096 AC009542.2-202ENST00000619004 1067 ntBASIC16.07■□□□□ 0.16
HMGA1P17096 MIR6869-201ENST00000619434 62 ntBASIC16.07■□□□□ 0.16
HMGA1P17096 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC16.07■□□□□ 0.16
HMGA1P17096 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGA1P17096 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGA1P17096 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGA1P17096 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGA1P17096 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGA1P17096 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC16.07■□□□□ 0.16
HMGA1P17096 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGA1P17096 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGA1P17096 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC16.07■□□□□ 0.16
HMGA1P17096 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGA1P17096 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.07■□□□□ 0.16
HMGA1P17096 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGA1P17096 DOC2GP-204ENST00000639052 2548 ntBASIC16.07■□□□□ 0.16
HMGA1P17096 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGA1P17096 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
HMGA1P17096 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGA1P17096 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
HMGA1P17096 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.07■□□□□ 0.16
HMGA1P17096 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGA1P17096 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGA1P17096 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGA1P17096 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGA1P17096 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGA1P17096 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
HMGA1P17096 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
HMGA1P17096 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGA1P17096 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
HMGA1P17096 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGA1P17096 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGA1P17096 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGA1P17096 AC104457.1-201ENST00000401024 814 ntBASIC16.06■□□□□ 0.16
HMGA1P17096 RPL5P21-201ENST00000404620 815 ntBASIC16.06■□□□□ 0.16
HMGA1P17096 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
HMGA1P17096 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGA1P17096 RPL13AP20-201ENST00000459725 609 ntBASIC16.06■□□□□ 0.16
HMGA1P17096 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGA1P17096 SNHG12-210ENST00000483436 682 ntTSL 3 BASIC16.06■□□□□ 0.16
HMGA1P17096 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGA1P17096 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGA1P17096 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC16.06■□□□□ 0.16
HMGA1P17096 AC023310.1-201ENST00000554836 735 ntBASIC16.06■□□□□ 0.16
HMGA1P17096 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC16.06■□□□□ 0.16
HMGA1P17096 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGA1P17096 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGA1P17096 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGA1P17096 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC16.06■□□□□ 0.16
HMGA1P17096 AC006453.4-201ENST00000636949 1252 ntBASIC16.06■□□□□ 0.16
HMGA1P17096 AC093326.2-201ENST00000640770 729 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGA1P17096 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
HMGA1P17096 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.06■□□□□ 0.16
HMGA1P17096 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.06■□□□□ 0.16
HMGA1P17096 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
HMGA1P17096 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
HMGA1P17096 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
HMGA1P17096 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
HMGA1P17096 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
HMGA1P17096 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGA1P17096 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC16.05■□□□□ 0.16
HMGA1P17096 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
HMGA1P17096 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.05■□□□□ 0.16
HMGA1P17096 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGA1P17096 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HMGA1P17096 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGA1P17096 KRT8P14-201ENST00000414254 1442 ntBASIC16.05■□□□□ 0.16
HMGA1P17096 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGA1P17096 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGA1P17096 PPM1H-201ENST00000228705 6353 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGA1P17096 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC16.05■□□□□ 0.16
HMGA1P17096 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
HMGA1P17096 APOC3-202ENST00000375345 604 ntTSL 5 BASIC16.05■□□□□ 0.16
HMGA1P17096 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HMGA1P17096 LSM5-207ENST00000410044 687 ntTSL 3 BASIC16.05■□□□□ 0.16
HMGA1P17096 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.05■□□□□ 0.16
HMGA1P17096 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC16.05■□□□□ 0.16
HMGA1P17096 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
HMGA1P17096 OLR1-203ENST00000432556 950 ntTSL 2 BASIC16.05■□□□□ 0.16
HMGA1P17096 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC16.05■□□□□ 0.16
HMGA1P17096 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC16.05■□□□□ 0.16
HMGA1P17096 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
HMGA1P17096 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC16.05■□□□□ 0.16
HMGA1P17096 RN7SL48P-201ENST00000579283 293 ntBASIC16.05■□□□□ 0.16
HMGA1P17096 MIR4525-201ENST00000580000 75 ntBASIC16.05■□□□□ 0.16
HMGA1P17096 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC16.05■□□□□ 0.16
HMGA1P17096 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 76.2 ms