Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC15.14■□□□□ 0.01
HOXC4P09017 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC15.14■□□□□ 0.01
HOXC4P09017 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC15.14■□□□□ 0.01
HOXC4P09017 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC15.14■□□□□ 0.01
HOXC4P09017 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.14■□□□□ 0.01
HOXC4P09017 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.14■□□□□ 0.01
HOXC4P09017 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HOXC4P09017 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC15.14■□□□□ 0.01
HOXC4P09017 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
HOXC4P09017 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HOXC4P09017 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
HOXC4P09017 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HOXC4P09017 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
HOXC4P09017 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
HOXC4P09017 KRT8P14-201ENST00000414254 1442 ntBASIC15.14■□□□□ 0.01
HOXC4P09017 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
HOXC4P09017 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HOXC4P09017 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HOXC4P09017 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.14■□□□□ 0.01
HOXC4P09017 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
HOXC4P09017 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.14■□□□□ 0.01
HOXC4P09017 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC15.14■□□□□ 0.01
HOXC4P09017 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC15.14■□□□□ 0.01
HOXC4P09017 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.14■□□□□ 0.01
HOXC4P09017 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.14■□□□□ 0.01
HOXC4P09017 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HOXC4P09017 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.13■□□□□ 0.01
HOXC4P09017 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.13■□□□□ 0.01
HOXC4P09017 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
HOXC4P09017 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC15.13■□□□□ 0.01
HOXC4P09017 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
HOXC4P09017 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
HOXC4P09017 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.13■□□□□ 0.01
HOXC4P09017 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
HOXC4P09017 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
HOXC4P09017 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC15.13■□□□□ 0.01
HOXC4P09017 AC007274.1-201ENST00000439805 662 ntBASIC15.13■□□□□ 0.01
HOXC4P09017 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC15.13■□□□□ 0.01
HOXC4P09017 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC15.13■□□□□ 0.01
HOXC4P09017 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC15.13■□□□□ 0.01
HOXC4P09017 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC15.13■□□□□ 0.01
HOXC4P09017 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC15.13■□□□□ 0.01
HOXC4P09017 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC15.13■□□□□ 0.01
HOXC4P09017 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.13■□□□□ 0.01
HOXC4P09017 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC15.13■□□□□ 0.01
HOXC4P09017 AC244669.2-201ENST00000612320 853 ntBASIC15.13■□□□□ 0.01
HOXC4P09017 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
HOXC4P09017 AC008687.7-202ENST00000637404 953 ntBASIC15.13■□□□□ 0.01
HOXC4P09017 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.13■□□□□ 0.01
HOXC4P09017 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.13■□□□□ 0.01
HOXC4P09017 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 AL158070.2-201ENST00000623713 1621 ntBASIC15.13■□□□□ 0.01
HOXC4P09017 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC15.13■□□□□ 0.01
HOXC4P09017 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC15.13■□□□□ 0.01
HOXC4P09017 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.13■□□□□ 0.01
HOXC4P09017 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
HOXC4P09017 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 CROCCP1-201ENST00000426910 5675 ntBASIC15.12■□□□□ 0.01
HOXC4P09017 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC15.12■□□□□ 0.01
HOXC4P09017 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
HOXC4P09017 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
HOXC4P09017 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.12■□□□□ 0.01
HOXC4P09017 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC15.12■□□□□ 0.01
HOXC4P09017 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
HOXC4P09017 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.12■□□□□ 0.01
HOXC4P09017 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
HOXC4P09017 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC15.12■□□□□ 0.01
HOXC4P09017 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
HOXC4P09017 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC15.12■□□□□ 0.01
HOXC4P09017 AC099336.1-201ENST00000417053 1171 ntBASIC15.12■□□□□ 0.01
HOXC4P09017 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms