Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC18.35■□□□□ 0.53
HLA-DOAP06340 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC18.35■□□□□ 0.53
HLA-DOAP06340 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC18.35■□□□□ 0.53
HLA-DOAP06340 RPL8-205ENST00000527914 551 ntTSL 3 BASIC18.35■□□□□ 0.53
HLA-DOAP06340 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC18.35■□□□□ 0.53
HLA-DOAP06340 GNRHR2-203ENST00000581100 1187 ntBASIC18.35■□□□□ 0.53
HLA-DOAP06340 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC18.35■□□□□ 0.53
HLA-DOAP06340 LARP4-220ENST00000615080 856 ntTSL 5 BASIC18.35■□□□□ 0.53
HLA-DOAP06340 RHOXF1P1-202ENST00000635473 501 ntBASIC18.35■□□□□ 0.53
HLA-DOAP06340 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC18.35■□□□□ 0.53
HLA-DOAP06340 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC18.35■□□□□ 0.53
HLA-DOAP06340 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DOAP06340 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DOAP06340 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
HLA-DOAP06340 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DOAP06340 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DOAP06340 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
HLA-DOAP06340 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HLA-DOAP06340 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
HLA-DOAP06340 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
HLA-DOAP06340 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HLA-DOAP06340 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HLA-DOAP06340 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HLA-DOAP06340 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
HLA-DOAP06340 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HLA-DOAP06340 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HLA-DOAP06340 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HLA-DOAP06340 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC18.34■□□□□ 0.53
HLA-DOAP06340 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HLA-DOAP06340 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC18.34■□□□□ 0.53
HLA-DOAP06340 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HLA-DOAP06340 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
HLA-DOAP06340 PFN2-205ENST00000461868 613 ntTSL 2 BASIC18.34■□□□□ 0.53
HLA-DOAP06340 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC18.34■□□□□ 0.53
HLA-DOAP06340 RNA5SP412-201ENST00000516234 123 ntBASIC18.34■□□□□ 0.53
HLA-DOAP06340 AL583810.1-201ENST00000553344 1045 ntBASIC18.34■□□□□ 0.53
HLA-DOAP06340 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HLA-DOAP06340 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC18.34■□□□□ 0.53
HLA-DOAP06340 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
HLA-DOAP06340 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HLA-DOAP06340 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
HLA-DOAP06340 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
HLA-DOAP06340 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
HLA-DOAP06340 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
HLA-DOAP06340 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
HLA-DOAP06340 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
HLA-DOAP06340 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC18.34■□□□□ 0.53
HLA-DOAP06340 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC18.34■□□□□ 0.53
HLA-DOAP06340 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
HLA-DOAP06340 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
HLA-DOAP06340 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HLA-DOAP06340 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
HLA-DOAP06340 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC18.33■□□□□ 0.53
HLA-DOAP06340 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
HLA-DOAP06340 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
HLA-DOAP06340 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.52
HLA-DOAP06340 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HLA-DOAP06340 APOC3-202ENST00000375345 604 ntTSL 5 BASIC18.33■□□□□ 0.52
HLA-DOAP06340 MPV17-206ENST00000402722 827 ntTSL 3 BASIC18.33■□□□□ 0.52
HLA-DOAP06340 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HLA-DOAP06340 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HLA-DOAP06340 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC18.33■□□□□ 0.52
HLA-DOAP06340 AC025279.2-201ENST00000569730 653 ntBASIC18.33■□□□□ 0.52
HLA-DOAP06340 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
HLA-DOAP06340 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC18.33■□□□□ 0.52
HLA-DOAP06340 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
HLA-DOAP06340 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC18.33■□□□□ 0.52
HLA-DOAP06340 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HLA-DOAP06340 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
HLA-DOAP06340 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.33■□□□□ 0.52
HLA-DOAP06340 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HLA-DOAP06340 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
HLA-DOAP06340 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HLA-DOAP06340 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC18.33■□□□□ 0.52
HLA-DOAP06340 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DOAP06340 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DOAP06340 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC18.32■□□□□ 0.52
HLA-DOAP06340 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DOAP06340 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DOAP06340 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC18.32■□□□□ 0.52
HLA-DOAP06340 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DOAP06340 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC18.32■□□□□ 0.52
HLA-DOAP06340 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DOAP06340 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
HLA-DOAP06340 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DOAP06340 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC18.32■□□□□ 0.52
HLA-DOAP06340 FER1L4-210ENST00000615531 5998 ntBASIC18.32■□□□□ 0.52
HLA-DOAP06340 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC18.32■□□□□ 0.52
HLA-DOAP06340 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DOAP06340 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DOAP06340 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
HLA-DOAP06340 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DOAP06340 NUS1P3-201ENST00000423502 862 ntBASIC18.32■□□□□ 0.52
HLA-DOAP06340 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
HLA-DOAP06340 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC18.32■□□□□ 0.52
HLA-DOAP06340 YBX1P6-201ENST00000442962 1002 ntBASIC18.32■□□□□ 0.52
HLA-DOAP06340 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DOAP06340 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC18.32■□□□□ 0.52
HLA-DOAP06340 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HLA-DOAP06340 TECR-220ENST00000600083 1204 ntTSL 2 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms