Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 RN7SL48P-201ENST00000579283 293 ntBASIC14.13□□□□□ -0.15
SPTA1P02549 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC14.13□□□□□ -0.15
SPTA1P02549 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SPTA1P02549 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
SPTA1P02549 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.13□□□□□ -0.15
SPTA1P02549 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SPTA1P02549 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SPTA1P02549 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SPTA1P02549 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SPTA1P02549 HLA-A-202ENST00000376806 1854 ntBASIC14.13□□□□□ -0.15
SPTA1P02549 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SPTA1P02549 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SPTA1P02549 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
SPTA1P02549 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
SPTA1P02549 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 OSBPL1A-201ENST00000319481 4195 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.12□□□□□ -0.15
SPTA1P02549 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
SPTA1P02549 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 IDS-203ENST00000428056 1213 ntTSL 2 BASIC14.12□□□□□ -0.15
SPTA1P02549 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC14.12□□□□□ -0.15
SPTA1P02549 EEF1DP6-201ENST00000449232 372 ntBASIC14.12□□□□□ -0.15
SPTA1P02549 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC14.12□□□□□ -0.15
SPTA1P02549 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC14.12□□□□□ -0.15
SPTA1P02549 MIR3147-201ENST00000577811 66 ntBASIC14.12□□□□□ -0.15
SPTA1P02549 ECM1P1-201ENST00000604092 1279 ntBASIC14.12□□□□□ -0.15
SPTA1P02549 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC14.12□□□□□ -0.15
SPTA1P02549 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
SPTA1P02549 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
SPTA1P02549 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC14.12□□□□□ -0.15
SPTA1P02549 LINC01144-201ENST00000626198 1710 ntBASIC14.12□□□□□ -0.15
SPTA1P02549 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
SPTA1P02549 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC14.12□□□□□ -0.15
SPTA1P02549 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
SPTA1P02549 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 CFL1-206ENST00000527344 962 ntTSL 2 BASIC14.12□□□□□ -0.15
SPTA1P02549 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC14.12□□□□□ -0.15
SPTA1P02549 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC14.12□□□□□ -0.15
SPTA1P02549 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
SPTA1P02549 AC132938.4-201ENST00000623835 848 ntBASIC14.12□□□□□ -0.15
SPTA1P02549 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC14.12□□□□□ -0.15
SPTA1P02549 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SPTA1P02549 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC14.11□□□□□ -0.15
SPTA1P02549 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SPTA1P02549 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SPTA1P02549 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14.11□□□□□ -0.15
SPTA1P02549 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC14.11□□□□□ -0.15
SPTA1P02549 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
SPTA1P02549 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SPTA1P02549 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SPTA1P02549 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SPTA1P02549 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SPTA1P02549 TMEM242-201ENST00000367144 1030 ntTSL 2 BASIC14.11□□□□□ -0.15
SPTA1P02549 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
SPTA1P02549 AL133267.1-201ENST00000398220 340 ntBASIC14.11□□□□□ -0.15
SPTA1P02549 AL139008.1-201ENST00000437894 228 ntBASIC14.11□□□□□ -0.15
SPTA1P02549 AC234782.1-201ENST00000451950 919 ntBASIC14.11□□□□□ -0.15
SPTA1P02549 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC14.11□□□□□ -0.15
SPTA1P02549 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC14.11□□□□□ -0.15
SPTA1P02549 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SPTA1P02549 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
SPTA1P02549 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC14.11□□□□□ -0.15
SPTA1P02549 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SPTA1P02549 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SPTA1P02549 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
SPTA1P02549 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.11□□□□□ -0.15
SPTA1P02549 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SPTA1P02549 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SPTA1P02549 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
SPTA1P02549 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SPTA1P02549 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SPTA1P02549 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
SPTA1P02549 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SPTA1P02549 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SPTA1P02549 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC14.11□□□□□ -0.15
SPTA1P02549 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SPTA1P02549 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms