Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC18.73■□□□□ 0.59
COL4A1P02462 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
COL4A1P02462 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A1P02462 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A1P02462 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC18.73■□□□□ 0.59
COL4A1P02462 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
COL4A1P02462 NDUFV2P1-201ENST00000596415 907 ntBASIC18.73■□□□□ 0.59
COL4A1P02462 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A1P02462 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL4A1P02462 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A1P02462 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC18.72■□□□□ 0.59
COL4A1P02462 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A1P02462 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
COL4A1P02462 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC18.72■□□□□ 0.59
COL4A1P02462 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A1P02462 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A1P02462 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A1P02462 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A1P02462 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A1P02462 AL136309.1-201ENST00000403917 691 ntBASIC18.72■□□□□ 0.59
COL4A1P02462 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC18.72■□□□□ 0.59
COL4A1P02462 PTPA-218ENST00000435132 618 ntTSL 2 BASIC18.72■□□□□ 0.59
COL4A1P02462 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC18.72■□□□□ 0.59
COL4A1P02462 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC18.72■□□□□ 0.59
COL4A1P02462 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A1P02462 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC18.72■□□□□ 0.59
COL4A1P02462 AC126915.1-201ENST00000522847 1038 ntBASIC18.72■□□□□ 0.59
COL4A1P02462 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A1P02462 MIR3619-201ENST00000579667 83 ntBASIC18.72■□□□□ 0.59
COL4A1P02462 INO80C-210ENST00000590757 595 ntTSL 2 BASIC18.72■□□□□ 0.59
COL4A1P02462 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC18.72■□□□□ 0.59
COL4A1P02462 AC016629.1-201ENST00000596579 586 ntBASIC18.72■□□□□ 0.59
COL4A1P02462 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC18.72■□□□□ 0.59
COL4A1P02462 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC18.72■□□□□ 0.59
COL4A1P02462 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC18.72■□□□□ 0.59
COL4A1P02462 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
COL4A1P02462 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
COL4A1P02462 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC18.72■□□□□ 0.59
COL4A1P02462 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC18.72■□□□□ 0.59
COL4A1P02462 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A1P02462 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A1P02462 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A1P02462 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A1P02462 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC18.71■□□□□ 0.59
COL4A1P02462 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A1P02462 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A1P02462 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
COL4A1P02462 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC18.71■□□□□ 0.59
COL4A1P02462 AC011840.2-201ENST00000563063 1520 ntBASIC18.71■□□□□ 0.59
COL4A1P02462 GSTT2B-201ENST00000290765 1099 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A1P02462 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A1P02462 AC007663.3-201ENST00000609632 465 ntBASIC18.71■□□□□ 0.59
COL4A1P02462 AP001505.2-201ENST00000616815 443 ntBASIC18.71■□□□□ 0.59
COL4A1P02462 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.71■□□□□ 0.59
COL4A1P02462 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
COL4A1P02462 PCDHA1-201ENST00000378133 2726 ntBASIC18.71■□□□□ 0.59
COL4A1P02462 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
COL4A1P02462 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A1P02462 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC18.71■□□□□ 0.59
COL4A1P02462 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A1P02462 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A1P02462 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A1P02462 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL4A1P02462 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
COL4A1P02462 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
COL4A1P02462 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC18.71■□□□□ 0.58
COL4A1P02462 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A1P02462 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC18.7■□□□□ 0.58
COL4A1P02462 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A1P02462 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A1P02462 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
COL4A1P02462 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC18.7■□□□□ 0.58
COL4A1P02462 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
COL4A1P02462 DKFZp779M0652-201ENST00000378779 649 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A1P02462 MESTP3-201ENST00000503460 968 ntBASIC18.7■□□□□ 0.58
COL4A1P02462 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC18.7■□□□□ 0.58
COL4A1P02462 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC18.7■□□□□ 0.58
COL4A1P02462 AC008537.4-201ENST00000595728 1103 ntTSL 5 BASIC18.7■□□□□ 0.58
COL4A1P02462 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC18.7■□□□□ 0.58
COL4A1P02462 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC18.7■□□□□ 0.58
COL4A1P02462 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.7■□□□□ 0.58
COL4A1P02462 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC18.7■□□□□ 0.58
COL4A1P02462 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A1P02462 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A1P02462 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A1P02462 KRT8P19-201ENST00000551916 1455 ntBASIC18.7■□□□□ 0.58
COL4A1P02462 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
COL4A1P02462 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A1P02462 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A1P02462 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A1P02462 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC18.7■□□□□ 0.58
COL4A1P02462 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC18.7■□□□□ 0.58
COL4A1P02462 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A1P02462 AC008132.1-202ENST00000342005 1389 ntBASIC18.7■□□□□ 0.58
COL4A1P02462 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A1P02462 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
COL4A1P02462 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A1P02462 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL4A1P02462 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
COL4A1P02462 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms