Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MBD4O95243 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC18.6■□□□□ 0.57
MBD4O95243 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
MBD4O95243 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MBD4O95243 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MBD4O95243 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
MBD4O95243 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
MBD4O95243 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MBD4O95243 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MBD4O95243 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC18.59■□□□□ 0.57
MBD4O95243 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
MBD4O95243 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC18.59■□□□□ 0.57
MBD4O95243 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MBD4O95243 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC18.59■□□□□ 0.57
MBD4O95243 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MBD4O95243 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC18.59■□□□□ 0.57
MBD4O95243 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MBD4O95243 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MBD4O95243 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC18.59■□□□□ 0.57
MBD4O95243 MIR5189-201ENST00000577370 114 ntBASIC18.59■□□□□ 0.57
MBD4O95243 CLUHP6-201ENST00000580789 941 ntBASIC18.59■□□□□ 0.57
MBD4O95243 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC18.59■□□□□ 0.57
MBD4O95243 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC18.59■□□□□ 0.57
MBD4O95243 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MBD4O95243 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
MBD4O95243 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
MBD4O95243 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MBD4O95243 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MBD4O95243 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MBD4O95243 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
MBD4O95243 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MBD4O95243 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC18.59■□□□□ 0.57
MBD4O95243 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
MBD4O95243 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.58■□□□□ 0.57
MBD4O95243 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
MBD4O95243 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
MBD4O95243 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
MBD4O95243 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.58■□□□□ 0.57
MBD4O95243 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
MBD4O95243 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
MBD4O95243 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC18.58■□□□□ 0.57
MBD4O95243 USE1-206ENST00000595101 1776 ntTSL 2 BASIC18.58■□□□□ 0.57
MBD4O95243 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
MBD4O95243 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
MBD4O95243 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
MBD4O95243 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
MBD4O95243 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
MBD4O95243 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
MBD4O95243 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
MBD4O95243 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MBD4O95243 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MBD4O95243 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
MBD4O95243 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC18.58■□□□□ 0.56
MBD4O95243 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC18.58■□□□□ 0.56
MBD4O95243 PFN2-205ENST00000461868 613 ntTSL 2 BASIC18.58■□□□□ 0.56
MBD4O95243 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC18.58■□□□□ 0.56
MBD4O95243 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MBD4O95243 ENPP7P5-201ENST00000541031 1031 ntBASIC18.58■□□□□ 0.56
MBD4O95243 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MBD4O95243 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC18.58■□□□□ 0.56
MBD4O95243 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC18.58■□□□□ 0.56
MBD4O95243 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MBD4O95243 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MBD4O95243 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MBD4O95243 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MBD4O95243 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MBD4O95243 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MBD4O95243 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
MBD4O95243 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC18.58■□□□□ 0.56
MBD4O95243 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MBD4O95243 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MBD4O95243 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MBD4O95243 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
MBD4O95243 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC18.57■□□□□ 0.56
MBD4O95243 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MBD4O95243 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC18.57■□□□□ 0.56
MBD4O95243 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
MBD4O95243 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
MBD4O95243 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
MBD4O95243 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MBD4O95243 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MBD4O95243 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MBD4O95243 TEX30-203ENST00000376022 828 ntTSL 2 BASIC18.57■□□□□ 0.56
MBD4O95243 SUN1-204ENST00000403868 978 ntTSL 2 BASIC18.57■□□□□ 0.56
MBD4O95243 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC18.57■□□□□ 0.56
MBD4O95243 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC18.57■□□□□ 0.56
MBD4O95243 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
MBD4O95243 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC18.57■□□□□ 0.56
MBD4O95243 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC18.57■□□□□ 0.56
MBD4O95243 AC093813.1-201ENST00000605066 256 ntBASIC18.57■□□□□ 0.56
MBD4O95243 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
MBD4O95243 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC18.57■□□□□ 0.56
MBD4O95243 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
MBD4O95243 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
MBD4O95243 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
MBD4O95243 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MBD4O95243 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC18.57■□□□□ 0.56
MBD4O95243 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MBD4O95243 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
MBD4O95243 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms