Protein–RNA interactions for Protein: O43633

CHMP2A, Charged multivesicular body protein 2a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2AO43633 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP2AO43633 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP2AO43633 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
CHMP2AO43633 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP2AO43633 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP2AO43633 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC17.59■□□□□ 0.41
CHMP2AO43633 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17.59■□□□□ 0.41
CHMP2AO43633 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC17.59■□□□□ 0.41
CHMP2AO43633 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
CHMP2AO43633 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC17.59■□□□□ 0.41
CHMP2AO43633 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP2AO43633 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP2AO43633 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP2AO43633 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
CHMP2AO43633 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP2AO43633 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP2AO43633 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC17.59■□□□□ 0.41
CHMP2AO43633 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CHMP2AO43633 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP2AO43633 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP2AO43633 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP2AO43633 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP2AO43633 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CHMP2AO43633 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC17.59■□□□□ 0.41
CHMP2AO43633 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC17.59■□□□□ 0.41
CHMP2AO43633 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC17.59■□□□□ 0.41
CHMP2AO43633 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC17.59■□□□□ 0.41
CHMP2AO43633 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP2AO43633 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC17.59■□□□□ 0.41
CHMP2AO43633 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP2AO43633 AL035252.4-201ENST00000624174 288 ntBASIC17.59■□□□□ 0.41
CHMP2AO43633 AL358472.5-202ENST00000641448 1267 ntBASIC17.59■□□□□ 0.41
CHMP2AO43633 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
CHMP2AO43633 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP2AO43633 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP2AO43633 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP2AO43633 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
CHMP2AO43633 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CHMP2AO43633 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
CHMP2AO43633 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CHMP2AO43633 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
CHMP2AO43633 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC17.58■□□□□ 0.41
CHMP2AO43633 CYP2AB1P-202ENST00000454440 1456 ntBASIC17.58■□□□□ 0.41
CHMP2AO43633 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC17.58■□□□□ 0.41
CHMP2AO43633 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
CHMP2AO43633 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP2AO43633 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
CHMP2AO43633 GRAP-202ENST00000395635 834 ntTSL 2 BASIC17.58■□□□□ 0.4
CHMP2AO43633 COX5BP8-201ENST00000416911 349 ntBASIC17.58■□□□□ 0.4
CHMP2AO43633 RN7SL752P-201ENST00000463779 287 ntBASIC17.58■□□□□ 0.4
CHMP2AO43633 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP2AO43633 AC092552.1-201ENST00000547243 906 ntBASIC17.58■□□□□ 0.4
CHMP2AO43633 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP2AO43633 GPX4-206ENST00000588919 803 ntTSL 2 BASIC17.58■□□□□ 0.4
CHMP2AO43633 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC17.58■□□□□ 0.4
CHMP2AO43633 WFDC1-204ENST00000613603 549 ntBASIC17.58■□□□□ 0.4
CHMP2AO43633 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC17.58■□□□□ 0.4
CHMP2AO43633 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP2AO43633 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC17.58■□□□□ 0.4
CHMP2AO43633 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP2AO43633 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP2AO43633 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP2AO43633 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP2AO43633 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
CHMP2AO43633 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP2AO43633 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.58■□□□□ 0.4
CHMP2AO43633 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP2AO43633 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP2AO43633 AC022188.1-201ENST00000620960 1664 ntBASIC17.58■□□□□ 0.4
CHMP2AO43633 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CHMP2AO43633 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC17.57■□□□□ 0.4
CHMP2AO43633 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP2AO43633 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP2AO43633 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC17.57■□□□□ 0.4
CHMP2AO43633 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP2AO43633 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CHMP2AO43633 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP2AO43633 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP2AO43633 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP2AO43633 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC17.57■□□□□ 0.4
CHMP2AO43633 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP2AO43633 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP2AO43633 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
CHMP2AO43633 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
CHMP2AO43633 POLE2-203ENST00000553805 496 ntTSL 2 BASIC17.57■□□□□ 0.4
CHMP2AO43633 AC015910.1-201ENST00000579400 975 ntBASIC17.57■□□□□ 0.4
CHMP2AO43633 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC17.57■□□□□ 0.4
CHMP2AO43633 AL049840.4-201ENST00000602422 811 ntBASIC17.57■□□□□ 0.4
CHMP2AO43633 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC17.57■□□□□ 0.4
CHMP2AO43633 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC17.57■□□□□ 0.4
CHMP2AO43633 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
CHMP2AO43633 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC17.57■□□□□ 0.4
CHMP2AO43633 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP2AO43633 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC17.57■□□□□ 0.4
CHMP2AO43633 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP2AO43633 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.57■□□□□ 0.4
CHMP2AO43633 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC17.57■□□□□ 0.4
CHMP2AO43633 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP2AO43633 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
CHMP2AO43633 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms