Protein–RNA interactions for Protein: O43556

SGCE, Epsilon-sarcoglycan, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SGCEO43556 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SGCEO43556 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SGCEO43556 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC13.95□□□□□ -0.18
SGCEO43556 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
SGCEO43556 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC13.95□□□□□ -0.18
SGCEO43556 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SGCEO43556 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC13.95□□□□□ -0.18
SGCEO43556 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC13.95□□□□□ -0.18
SGCEO43556 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SGCEO43556 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SGCEO43556 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SGCEO43556 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SGCEO43556 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
SGCEO43556 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
SGCEO43556 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC13.95□□□□□ -0.18
SGCEO43556 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC13.94□□□□□ -0.18
SGCEO43556 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 C20orf203-202ENST00000608990 5076 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
SGCEO43556 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC13.94□□□□□ -0.18
SGCEO43556 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC13.94□□□□□ -0.18
SGCEO43556 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 AC126177.1-201ENST00000547829 2218 ntBASIC13.94□□□□□ -0.18
SGCEO43556 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC13.94□□□□□ -0.18
SGCEO43556 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC13.94□□□□□ -0.18
SGCEO43556 MTND6P24-201ENST00000440466 518 ntBASIC13.94□□□□□ -0.18
SGCEO43556 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC13.94□□□□□ -0.18
SGCEO43556 PHKG1P2-201ENST00000457537 863 ntBASIC13.94□□□□□ -0.18
SGCEO43556 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC13.94□□□□□ -0.18
SGCEO43556 FXR1-221ENST00000491674 365 ntTSL 2 BASIC13.94□□□□□ -0.18
SGCEO43556 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC13.94□□□□□ -0.18
SGCEO43556 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC13.94□□□□□ -0.18
SGCEO43556 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC13.94□□□□□ -0.18
SGCEO43556 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
SGCEO43556 AL512356.2-201ENST00000546955 174 ntBASIC13.94□□□□□ -0.18
SGCEO43556 BANF1P1-201ENST00000553684 263 ntBASIC13.94□□□□□ -0.18
SGCEO43556 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC13.94□□□□□ -0.18
SGCEO43556 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC13.94□□□□□ -0.18
SGCEO43556 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC13.94□□□□□ -0.18
SGCEO43556 LINC00628-201ENST00000628516 1289 ntBASIC13.94□□□□□ -0.18
SGCEO43556 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC13.94□□□□□ -0.18
SGCEO43556 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC13.94□□□□□ -0.18
SGCEO43556 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 PAWR-201ENST00000328827 9129 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC13.94□□□□□ -0.18
SGCEO43556 FLII-221ENST00000578558 2377 ntTSL 5 BASIC13.94□□□□□ -0.18
SGCEO43556 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC13.94□□□□□ -0.18
SGCEO43556 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
SGCEO43556 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC13.94□□□□□ -0.18
SGCEO43556 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
SGCEO43556 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC13.93□□□□□ -0.18
SGCEO43556 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SGCEO43556 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SGCEO43556 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SGCEO43556 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SGCEO43556 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SGCEO43556 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
SGCEO43556 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SGCEO43556 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
SGCEO43556 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC13.93□□□□□ -0.18
SGCEO43556 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC13.93□□□□□ -0.18
SGCEO43556 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC13.93□□□□□ -0.18
SGCEO43556 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC13.93□□□□□ -0.18
SGCEO43556 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
SGCEO43556 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC13.93□□□□□ -0.18
SGCEO43556 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC13.93□□□□□ -0.18
SGCEO43556 TSEN15P1-201ENST00000423257 515 ntBASIC13.93□□□□□ -0.18
SGCEO43556 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC13.93□□□□□ -0.18
SGCEO43556 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC13.93□□□□□ -0.18
SGCEO43556 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SGCEO43556 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC13.93□□□□□ -0.18
SGCEO43556 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC13.93□□□□□ -0.18
SGCEO43556 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SGCEO43556 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SGCEO43556 SPIB-207ENST00000597855 564 ntTSL 4 BASIC13.93□□□□□ -0.18
SGCEO43556 RN7SL828P-201ENST00000607615 303 ntBASIC13.93□□□□□ -0.18
SGCEO43556 MBNL1-205ENST00000355460 5941 ntAPPRIS ALT1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SGCEO43556 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
SGCEO43556 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC13.93□□□□□ -0.18
SGCEO43556 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
SGCEO43556 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
SGCEO43556 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC13.93□□□□□ -0.18
SGCEO43556 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms