Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC17.38■□□□□ 0.37
VTA1Q9NP79 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.38■□□□□ 0.37
VTA1Q9NP79 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VTA1Q9NP79 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
VTA1Q9NP79 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
VTA1Q9NP79 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC17.38■□□□□ 0.37
VTA1Q9NP79 PSMC3-209ENST00000530912 1390 ntTSL 5 BASIC17.38■□□□□ 0.37
VTA1Q9NP79 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VTA1Q9NP79 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
VTA1Q9NP79 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VTA1Q9NP79 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC17.38■□□□□ 0.37
VTA1Q9NP79 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VTA1Q9NP79 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VTA1Q9NP79 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VTA1Q9NP79 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
VTA1Q9NP79 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VTA1Q9NP79 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VTA1Q9NP79 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
VTA1Q9NP79 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
VTA1Q9NP79 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VTA1Q9NP79 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.37■□□□□ 0.37
VTA1Q9NP79 AC112504.1-201ENST00000623415 1841 ntBASIC17.37■□□□□ 0.37
VTA1Q9NP79 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VTA1Q9NP79 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
VTA1Q9NP79 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
VTA1Q9NP79 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
VTA1Q9NP79 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VTA1Q9NP79 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VTA1Q9NP79 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VTA1Q9NP79 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VTA1Q9NP79 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
VTA1Q9NP79 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
VTA1Q9NP79 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
VTA1Q9NP79 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC17.37■□□□□ 0.37
VTA1Q9NP79 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VTA1Q9NP79 AC022188.1-201ENST00000620960 1664 ntBASIC17.37■□□□□ 0.37
VTA1Q9NP79 RPS3-201ENST00000278572 907 ntTSL 3 BASIC17.37■□□□□ 0.37
VTA1Q9NP79 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VTA1Q9NP79 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VTA1Q9NP79 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC17.37■□□□□ 0.37
VTA1Q9NP79 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
VTA1Q9NP79 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC17.37■□□□□ 0.37
VTA1Q9NP79 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC17.37■□□□□ 0.37
VTA1Q9NP79 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC17.37■□□□□ 0.37
VTA1Q9NP79 EEF1DP1-201ENST00000585891 896 ntBASIC17.37■□□□□ 0.37
VTA1Q9NP79 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC17.37■□□□□ 0.37
VTA1Q9NP79 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC17.37■□□□□ 0.37
VTA1Q9NP79 AL139099.5-201ENST00000635274 300 ntBASIC17.37■□□□□ 0.37
VTA1Q9NP79 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC17.37■□□□□ 0.37
VTA1Q9NP79 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.37■□□□□ 0.37
VTA1Q9NP79 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VTA1Q9NP79 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VTA1Q9NP79 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
VTA1Q9NP79 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC17.37■□□□□ 0.37
VTA1Q9NP79 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VTA1Q9NP79 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC17.37■□□□□ 0.37
VTA1Q9NP79 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC17.37■□□□□ 0.37
VTA1Q9NP79 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
VTA1Q9NP79 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.37■□□□□ 0.37
VTA1Q9NP79 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
VTA1Q9NP79 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VTA1Q9NP79 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
VTA1Q9NP79 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VTA1Q9NP79 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
VTA1Q9NP79 LRRC59-203ENST00000576448 1531 ntBASIC17.37■□□□□ 0.37
VTA1Q9NP79 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC17.36■□□□□ 0.37
VTA1Q9NP79 AC007787.1-201ENST00000588095 1583 ntBASIC17.36■□□□□ 0.37
VTA1Q9NP79 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
VTA1Q9NP79 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC17.36■□□□□ 0.37
VTA1Q9NP79 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
VTA1Q9NP79 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC17.36■□□□□ 0.37
VTA1Q9NP79 HOMER2P2-201ENST00000451621 847 ntBASIC17.36■□□□□ 0.37
VTA1Q9NP79 AL591846.1-201ENST00000451736 433 ntBASIC17.36■□□□□ 0.37
VTA1Q9NP79 ACR-203ENST00000529621 708 ntTSL 5 BASIC17.36■□□□□ 0.37
VTA1Q9NP79 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 AP005329.1-201ENST00000578800 1035 ntTSL 2 BASIC17.36■□□□□ 0.37
VTA1Q9NP79 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC17.36■□□□□ 0.37
VTA1Q9NP79 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
VTA1Q9NP79 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 AL645728.2-202ENST00000641679 227 ntBASIC17.36■□□□□ 0.37
VTA1Q9NP79 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC17.36■□□□□ 0.37
VTA1Q9NP79 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC17.36■□□□□ 0.37
VTA1Q9NP79 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
VTA1Q9NP79 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.36■□□□□ 0.37
VTA1Q9NP79 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms