Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 TRIM67-201ENST00000366653 3936 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 USP17L2-201ENST00000333796 1910 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 ILF2-201ENST00000361891 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 ABCC1-201ENST00000399408 6594 ntTSL 5 BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 ABCC1-202ENST00000399410 6552 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 RPL5P21-201ENST00000404620 815 ntBASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 EEF1DP4-201ENST00000446006 880 ntBASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 USP31-203ENST00000567975 2142 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 GRB2-203ENST00000392562 3729 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 NDRG4-217ENST00000562999 2931 ntTSL 5 BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
CCDC28BQ9BUN5 LINC00987-201ENST00000427111 2472 ntTSL 2 BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 LINC00887-202ENST00000414120 2880 ntTSL 3 BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 KRT8P37-201ENST00000451609 1420 ntBASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 AC098831.1-202ENST00000438821 336 ntBASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 AC105233.2-201ENST00000523697 349 ntBASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 AF228730.5-201ENST00000530288 346 ntBASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 MBLAC2-202ENST00000514906 1936 ntBASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.29■□□□□ 0.04
CCDC28BQ9BUN5 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
CCDC28BQ9BUN5 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms