Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 TMEM176B-201ENST00000326442 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL12A1Q99715 AL136309.1-201ENST00000403917 691 ntBASIC13.39□□□□□ -0.27
COL12A1Q99715 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC13.39□□□□□ -0.27
COL12A1Q99715 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC13.39□□□□□ -0.27
COL12A1Q99715 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC13.39□□□□□ -0.27
COL12A1Q99715 AC103810.10-201ENST00000606504 343 ntBASIC13.39□□□□□ -0.27
COL12A1Q99715 LINC00431-202ENST00000636375 159 ntBASIC13.39□□□□□ -0.27
COL12A1Q99715 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
COL12A1Q99715 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
COL12A1Q99715 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
COL12A1Q99715 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL12A1Q99715 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL12A1Q99715 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL12A1Q99715 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL12A1Q99715 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
COL12A1Q99715 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL12A1Q99715 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL12A1Q99715 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL12A1Q99715 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL12A1Q99715 HNRNPA1P58-201ENST00000403629 610 ntBASIC13.39□□□□□ -0.27
COL12A1Q99715 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC13.39□□□□□ -0.27
COL12A1Q99715 ZAP70-202ENST00000451498 1085 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
COL12A1Q99715 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC13.39□□□□□ -0.27
COL12A1Q99715 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC13.39□□□□□ -0.27
COL12A1Q99715 STUB1-204ENST00000564370 875 ntTSL 2 BASIC13.39□□□□□ -0.27
COL12A1Q99715 AC005632.3-201ENST00000605544 308 ntBASIC13.39□□□□□ -0.27
COL12A1Q99715 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC13.39□□□□□ -0.27
COL12A1Q99715 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC13.39□□□□□ -0.27
COL12A1Q99715 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
COL12A1Q99715 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL12A1Q99715 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL12A1Q99715 NIT1-203ENST00000368009 1362 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL12A1Q99715 GATB-213ENST00000515812 1893 ntTSL 5 BASIC13.39□□□□□ -0.27
COL12A1Q99715 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC13.39□□□□□ -0.27
COL12A1Q99715 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
COL12A1Q99715 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC13.39□□□□□ -0.27
COL12A1Q99715 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL12A1Q99715 AP000356.3-201ENST00000382243 753 ntBASIC13.38□□□□□ -0.27
COL12A1Q99715 RN7SL258P-201ENST00000478664 300 ntBASIC13.38□□□□□ -0.27
COL12A1Q99715 AC008723.1-201ENST00000506922 207 ntBASIC13.38□□□□□ -0.27
COL12A1Q99715 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC13.38□□□□□ -0.27
COL12A1Q99715 HPN-206ENST00000597419 1212 ntTSL 5 BASIC13.38□□□□□ -0.27
COL12A1Q99715 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL12A1Q99715 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL12A1Q99715 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL12A1Q99715 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC13.38□□□□□ -0.27
COL12A1Q99715 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL12A1Q99715 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL12A1Q99715 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC13.38□□□□□ -0.27
COL12A1Q99715 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL12A1Q99715 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC13.38□□□□□ -0.27
COL12A1Q99715 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC13.38□□□□□ -0.27
COL12A1Q99715 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC13.38□□□□□ -0.27
COL12A1Q99715 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL12A1Q99715 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC13.38□□□□□ -0.27
COL12A1Q99715 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC13.38□□□□□ -0.27
COL12A1Q99715 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC13.38□□□□□ -0.27
COL12A1Q99715 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL12A1Q99715 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL12A1Q99715 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC13.38□□□□□ -0.27
COL12A1Q99715 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL12A1Q99715 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL12A1Q99715 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC13.38□□□□□ -0.27
COL12A1Q99715 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL12A1Q99715 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL12A1Q99715 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL12A1Q99715 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL12A1Q99715 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC13.38□□□□□ -0.27
COL12A1Q99715 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL12A1Q99715 SMAD9-IT1-201ENST00000437983 504 ntTSL 3 BASIC13.38□□□□□ -0.27
COL12A1Q99715 POU5F1P2-201ENST00000521750 823 ntBASIC13.38□□□□□ -0.27
COL12A1Q99715 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC13.38□□□□□ -0.27
COL12A1Q99715 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC13.38□□□□□ -0.27
COL12A1Q99715 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL12A1Q99715 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
COL12A1Q99715 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
COL12A1Q99715 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC13.38□□□□□ -0.27
COL12A1Q99715 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC13.37□□□□□ -0.27
COL12A1Q99715 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
COL12A1Q99715 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC13.37□□□□□ -0.27
COL12A1Q99715 AC013726.1-201ENST00000563747 2285 ntBASIC13.37□□□□□ -0.27
COL12A1Q99715 LRRFIP1-202ENST00000289175 3709 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL12A1Q99715 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
COL12A1Q99715 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
COL12A1Q99715 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL12A1Q99715 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL12A1Q99715 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL12A1Q99715 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL12A1Q99715 CGB1-201ENST00000301407 573 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL12A1Q99715 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC13.37□□□□□ -0.27
COL12A1Q99715 AC007319.1-201ENST00000453517 802 ntTSL 3 BASIC13.37□□□□□ -0.27
COL12A1Q99715 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL12A1Q99715 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC13.37□□□□□ -0.27
COL12A1Q99715 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC13.37□□□□□ -0.27
COL12A1Q99715 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL12A1Q99715 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
COL12A1Q99715 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
COL12A1Q99715 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
COL12A1Q99715 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
COL12A1Q99715 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 53.7 ms