Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDCA3Q99618 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CDCA3Q99618 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDCA3Q99618 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.07■□□□□ 0.16
CDCA3Q99618 AC091046.1-201ENST00000331871 207 ntBASIC16.07■□□□□ 0.16
CDCA3Q99618 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CDCA3Q99618 AP003171.2-201ENST00000528208 925 ntBASIC16.07■□□□□ 0.16
CDCA3Q99618 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
CDCA3Q99618 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC16.07■□□□□ 0.16
CDCA3Q99618 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC16.07■□□□□ 0.16
CDCA3Q99618 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CDCA3Q99618 MIR7845-201ENST00000618396 99 ntBASIC16.07■□□□□ 0.16
CDCA3Q99618 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC16.07■□□□□ 0.16
CDCA3Q99618 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CDCA3Q99618 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDCA3Q99618 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDCA3Q99618 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDCA3Q99618 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDCA3Q99618 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC16.07■□□□□ 0.16
CDCA3Q99618 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.07■□□□□ 0.16
CDCA3Q99618 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDCA3Q99618 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
CDCA3Q99618 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CDCA3Q99618 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDCA3Q99618 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDCA3Q99618 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC16.07■□□□□ 0.16
CDCA3Q99618 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDCA3Q99618 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CDCA3Q99618 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CDCA3Q99618 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CDCA3Q99618 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.06■□□□□ 0.16
CDCA3Q99618 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CDCA3Q99618 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDCA3Q99618 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
CDCA3Q99618 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC16.06■□□□□ 0.16
CDCA3Q99618 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC16.06■□□□□ 0.16
CDCA3Q99618 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC16.06■□□□□ 0.16
CDCA3Q99618 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDCA3Q99618 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CDCA3Q99618 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CDCA3Q99618 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDCA3Q99618 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CDCA3Q99618 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CDCA3Q99618 ANKDD1A-203ENST00000395723 1250 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CDCA3Q99618 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC16.06■□□□□ 0.16
CDCA3Q99618 AC006335.1-201ENST00000445200 547 ntBASIC16.06■□□□□ 0.16
CDCA3Q99618 EEF1DP6-201ENST00000449232 372 ntBASIC16.06■□□□□ 0.16
CDCA3Q99618 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC16.06■□□□□ 0.16
CDCA3Q99618 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC16.06■□□□□ 0.16
CDCA3Q99618 AC091390.4-201ENST00000484974 491 ntTSL 3 BASIC16.06■□□□□ 0.16
CDCA3Q99618 NUP210P1-202ENST00000504322 710 ntBASIC16.06■□□□□ 0.16
CDCA3Q99618 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.06■□□□□ 0.16
CDCA3Q99618 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
CDCA3Q99618 SAMD11P1-201ENST00000571429 661 ntBASIC16.06■□□□□ 0.16
CDCA3Q99618 RN7SL574P-201ENST00000581512 297 ntBASIC16.06■□□□□ 0.16
CDCA3Q99618 AL805961.1-203ENST00000641078 1258 ntBASIC16.06■□□□□ 0.16
CDCA3Q99618 AC004923.1-202ENST00000642106 209 ntBASIC16.06■□□□□ 0.16
CDCA3Q99618 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDCA3Q99618 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDCA3Q99618 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
CDCA3Q99618 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDCA3Q99618 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDCA3Q99618 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDCA3Q99618 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDCA3Q99618 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
CDCA3Q99618 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDCA3Q99618 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDCA3Q99618 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.06■□□□□ 0.16
CDCA3Q99618 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CDCA3Q99618 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CDCA3Q99618 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CDCA3Q99618 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.05■□□□□ 0.16
CDCA3Q99618 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.05■□□□□ 0.16
CDCA3Q99618 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDCA3Q99618 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CDCA3Q99618 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.05■□□□□ 0.16
CDCA3Q99618 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CDCA3Q99618 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.05■□□□□ 0.16
CDCA3Q99618 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CDCA3Q99618 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDCA3Q99618 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CDCA3Q99618 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
CDCA3Q99618 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
CDCA3Q99618 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CDCA3Q99618 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.05■□□□□ 0.16
CDCA3Q99618 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CDCA3Q99618 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CDCA3Q99618 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CDCA3Q99618 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CDCA3Q99618 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC16.05■□□□□ 0.16
CDCA3Q99618 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CDCA3Q99618 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.05■□□□□ 0.16
CDCA3Q99618 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC16.05■□□□□ 0.16
CDCA3Q99618 EID1-202ENST00000560490 584 ntTSL 3 BASIC16.05■□□□□ 0.16
CDCA3Q99618 PRKXP1-201ENST00000561423 1122 ntBASIC16.05■□□□□ 0.16
CDCA3Q99618 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC16.05■□□□□ 0.16
CDCA3Q99618 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC16.05■□□□□ 0.16
CDCA3Q99618 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC16.05■□□□□ 0.16
CDCA3Q99618 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC16.05■□□□□ 0.16
CDCA3Q99618 AL136295.7-201ENST00000619226 1200 ntBASIC16.05■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms