Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.81□□□□□ -0.04
PTCHD1Q96NR3 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 WARS-232ENST00000556645 2508 ntTSL 5 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 DFFBP1-201ENST00000433250 979 ntBASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 AL353779.1-201ENST00000434793 351 ntBASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 AC023310.3-201ENST00000557027 670 ntBASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 AC100756.1-201ENST00000562736 682 ntBASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 AC138749.3-201ENST00000567691 622 ntBASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 COX11-202ENST00000571584 1108 ntTSL 2 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 AC116165.1-201ENST00000611806 668 ntBASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
PTCHD1Q96NR3 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 AC087499.6-201ENST00000411576 835 ntBASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 AC190387.1-201ENST00000551683 408 ntBASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.79□□□□□ -0.04
PTCHD1Q96NR3 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms