Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 NPM1P43-201ENST00000558669 786 ntBASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 GPR39-203ENST00000622084 900 ntTSL 5 BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
CCDC88AQ3V6T2 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 ANXA6-202ENST00000377751 1430 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 AL160314.3-201ENST00000556041 767 ntBASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 AC103808.5-201ENST00000577797 462 ntTSL 3 BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
CCDC88AQ3V6T2 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 PDE6G-201ENST00000331056 1029 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 SUN1-204ENST00000403868 978 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 OARD1-204ENST00000464633 717 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 AC234644.1-201ENST00000406065 370 ntBASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 FANCA-205ENST00000543736 1000 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 CSH2-206ENST00000560142 749 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
CCDC88AQ3V6T2 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 TKT-202ENST00000423516 2075 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 POLL-217ENST00000628479 1953 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 SLC16A6P1-201ENST00000413214 1059 ntBASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 FGFR3P1-201ENST00000449999 601 ntBASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 NOC2LP1-201ENST00000450578 752 ntBASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 GLYCTK-204ENST00000471180 992 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 AC135983.4-201ENST00000564116 1262 ntBASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 AIPL1-211ENST00000576776 1190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 AC132192.2-201ENST00000596206 1147 ntBASIC18.79■□□□□ 0.6
CCDC88AQ3V6T2 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms