Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
FOXA3P55318 AC005252.3-201ENST00000623855 2258 ntBASIC11.85□□□□□ -0.51
FOXA3P55318 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC11.85□□□□□ -0.51
FOXA3P55318 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
FOXA3P55318 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC11.85□□□□□ -0.51
FOXA3P55318 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
FOXA3P55318 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC11.85□□□□□ -0.51
FOXA3P55318 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC11.85□□□□□ -0.51
FOXA3P55318 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC11.85□□□□□ -0.51
FOXA3P55318 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 AL645939.2-201ENST00000427340 991 ntBASIC11.85□□□□□ -0.51
FOXA3P55318 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 MTRF1LP2-201ENST00000506027 1122 ntBASIC11.85□□□□□ -0.51
FOXA3P55318 AC022616.7-201ENST00000525383 220 ntBASIC11.85□□□□□ -0.51
FOXA3P55318 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC11.85□□□□□ -0.51
FOXA3P55318 TPSP2-201ENST00000561760 610 ntBASIC11.85□□□□□ -0.51
FOXA3P55318 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC11.85□□□□□ -0.51
FOXA3P55318 NKAPP1-205ENST00000585790 367 ntBASIC11.85□□□□□ -0.51
FOXA3P55318 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC11.85□□□□□ -0.51
FOXA3P55318 AL139288.1-201ENST00000623748 933 ntBASIC11.85□□□□□ -0.51
FOXA3P55318 AL805961.1-202ENST00000641562 540 ntBASIC11.85□□□□□ -0.51
FOXA3P55318 KLHL21-201ENST00000377658 4487 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC11.85□□□□□ -0.51
FOXA3P55318 ARHGAP23P1-201ENST00000562773 1937 ntBASIC11.85□□□□□ -0.51
FOXA3P55318 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC11.85□□□□□ -0.51
FOXA3P55318 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 PCDHA7-201ENST00000356878 2922 ntAPPRIS ALT2 BASIC11.85□□□□□ -0.51
FOXA3P55318 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC11.85□□□□□ -0.51
FOXA3P55318 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC11.85□□□□□ -0.51
FOXA3P55318 MINDY4-201ENST00000265299 2733 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
FOXA3P55318 BLK-201ENST00000259089 2606 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
FOXA3P55318 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC11.85□□□□□ -0.51
FOXA3P55318 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC11.85□□□□□ -0.51
FOXA3P55318 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC11.85□□□□□ -0.51
FOXA3P55318 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC11.85□□□□□ -0.51
FOXA3P55318 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC11.84□□□□□ -0.51
FOXA3P55318 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC11.84□□□□□ -0.51
FOXA3P55318 TIGD6-201ENST00000296736 4006 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC11.84□□□□□ -0.51
FOXA3P55318 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC11.84□□□□□ -0.51
FOXA3P55318 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
FOXA3P55318 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC11.84□□□□□ -0.51
FOXA3P55318 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC11.84□□□□□ -0.51
FOXA3P55318 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC11.84□□□□□ -0.51
FOXA3P55318 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
FOXA3P55318 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC11.84□□□□□ -0.51
FOXA3P55318 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC11.84□□□□□ -0.51
FOXA3P55318 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC11.84□□□□□ -0.51
FOXA3P55318 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC11.84□□□□□ -0.51
FOXA3P55318 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 FAM8A3P-201ENST00000427218 844 ntBASIC11.84□□□□□ -0.51
FOXA3P55318 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC11.84□□□□□ -0.51
FOXA3P55318 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC11.84□□□□□ -0.51
FOXA3P55318 BET1L-206ENST00000486280 665 ntTSL 3 BASIC11.84□□□□□ -0.51
FOXA3P55318 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC11.84□□□□□ -0.51
FOXA3P55318 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC11.84□□□□□ -0.51
FOXA3P55318 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC11.84□□□□□ -0.51
FOXA3P55318 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC11.84□□□□□ -0.51
FOXA3P55318 CIB2-208ENST00000560618 804 ntTSL 2 BASIC11.84□□□□□ -0.51
FOXA3P55318 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC11.84□□□□□ -0.51
FOXA3P55318 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 METTL23-204ENST00000586752 904 ntTSL 2 BASIC11.84□□□□□ -0.51
FOXA3P55318 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
FOXA3P55318 GGTLC5P-201ENST00000617623 998 ntBASIC11.84□□□□□ -0.51
FOXA3P55318 CCNC-219ENST00000627680 896 ntTSL 5 BASIC11.84□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms