Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 OR2I1P-210ENST00000642037 4691 ntBASIC13.84□□□□□ -0.19
CX3CR1P49238 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC13.84□□□□□ -0.19
CX3CR1P49238 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC13.84□□□□□ -0.19
CX3CR1P49238 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
CX3CR1P49238 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC13.84□□□□□ -0.19
CX3CR1P49238 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC13.84□□□□□ -0.19
CX3CR1P49238 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
CX3CR1P49238 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC13.84□□□□□ -0.19
CX3CR1P49238 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
CX3CR1P49238 AIFM2-204ENST00000613322 3247 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CX3CR1P49238 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
CX3CR1P49238 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
CX3CR1P49238 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 CD81-202ENST00000381036 880 ntTSL 3 BASIC13.84□□□□□ -0.19
CX3CR1P49238 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC13.84□□□□□ -0.19
CX3CR1P49238 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC13.84□□□□□ -0.19
CX3CR1P49238 FAM58DP-201ENST00000428076 619 ntBASIC13.84□□□□□ -0.19
CX3CR1P49238 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC13.84□□□□□ -0.19
CX3CR1P49238 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC13.84□□□□□ -0.19
CX3CR1P49238 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC13.84□□□□□ -0.19
CX3CR1P49238 AC105021.1-202ENST00000570572 669 ntBASIC13.84□□□□□ -0.19
CX3CR1P49238 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC13.84□□□□□ -0.19
CX3CR1P49238 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC13.84□□□□□ -0.19
CX3CR1P49238 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC13.84□□□□□ -0.19
CX3CR1P49238 SPIB-207ENST00000597855 564 ntTSL 4 BASIC13.84□□□□□ -0.19
CX3CR1P49238 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC13.84□□□□□ -0.19
CX3CR1P49238 AC018529.1-201ENST00000613063 361 ntBASIC13.84□□□□□ -0.19
CX3CR1P49238 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC13.84□□□□□ -0.19
CX3CR1P49238 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC13.84□□□□□ -0.19
CX3CR1P49238 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CX3CR1P49238 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC13.84□□□□□ -0.19
CX3CR1P49238 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
CX3CR1P49238 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC13.84□□□□□ -0.19
CX3CR1P49238 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC13.84□□□□□ -0.19
CX3CR1P49238 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
CX3CR1P49238 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC13.84□□□□□ -0.19
CX3CR1P49238 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC13.84□□□□□ -0.19
CX3CR1P49238 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.19
CX3CR1P49238 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
CX3CR1P49238 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
CX3CR1P49238 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CX3CR1P49238 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
CX3CR1P49238 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
CX3CR1P49238 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
CX3CR1P49238 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC13.83□□□□□ -0.2
CX3CR1P49238 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CX3CR1P49238 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC13.83□□□□□ -0.2
CX3CR1P49238 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC13.83□□□□□ -0.2
CX3CR1P49238 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
CX3CR1P49238 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
CX3CR1P49238 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 COA5-202ENST00000409997 557 ntTSL 4 BASIC13.83□□□□□ -0.2
CX3CR1P49238 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC13.83□□□□□ -0.2
CX3CR1P49238 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC13.83□□□□□ -0.2
CX3CR1P49238 BX842568.4-201ENST00000421222 227 ntBASIC13.83□□□□□ -0.2
CX3CR1P49238 COX10-202ENST00000429152 875 ntTSL 2 BASIC13.83□□□□□ -0.2
CX3CR1P49238 RBPMS2P1-201ENST00000437762 623 ntBASIC13.83□□□□□ -0.2
CX3CR1P49238 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC13.83□□□□□ -0.2
CX3CR1P49238 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC13.83□□□□□ -0.2
CX3CR1P49238 FXR1-221ENST00000491674 365 ntTSL 2 BASIC13.83□□□□□ -0.2
CX3CR1P49238 AP000344.2-201ENST00000512987 629 ntBASIC13.83□□□□□ -0.2
CX3CR1P49238 HNRNPUP1-201ENST00000554987 333 ntBASIC13.83□□□□□ -0.2
CX3CR1P49238 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC13.83□□□□□ -0.2
CX3CR1P49238 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC13.83□□□□□ -0.2
CX3CR1P49238 AC003101.2-201ENST00000612557 442 ntBASIC13.83□□□□□ -0.2
CX3CR1P49238 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
CX3CR1P49238 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC13.83□□□□□ -0.2
CX3CR1P49238 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC13.83□□□□□ -0.2
CX3CR1P49238 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
CX3CR1P49238 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms