Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC13.35□□□□□ -0.27
USF1P22415 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 AC098850.1-201ENST00000419919 790 ntBASIC13.35□□□□□ -0.27
USF1P22415 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC13.35□□□□□ -0.27
USF1P22415 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC13.35□□□□□ -0.27
USF1P22415 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC13.35□□□□□ -0.27
USF1P22415 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC13.35□□□□□ -0.27
USF1P22415 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC13.35□□□□□ -0.27
USF1P22415 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC13.35□□□□□ -0.27
USF1P22415 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC13.35□□□□□ -0.27
USF1P22415 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC13.35□□□□□ -0.27
USF1P22415 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC13.35□□□□□ -0.27
USF1P22415 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC13.35□□□□□ -0.27
USF1P22415 AC015936.2-201ENST00000593177 259 ntBASIC13.35□□□□□ -0.27
USF1P22415 AL512343.1-201ENST00000605837 169 ntBASIC13.35□□□□□ -0.27
USF1P22415 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 ZFPM2-201ENST00000407775 4700 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 AL136982.4-201ENST00000437689 1740 ntBASIC13.35□□□□□ -0.27
USF1P22415 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC13.35□□□□□ -0.27
USF1P22415 AC132872.4-202ENST00000622924 2756 ntBASIC13.35□□□□□ -0.27
USF1P22415 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC13.35□□□□□ -0.27
USF1P22415 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC13.35□□□□□ -0.27
USF1P22415 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC13.35□□□□□ -0.27
USF1P22415 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC13.35□□□□□ -0.27
USF1P22415 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
USF1P22415 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC13.34□□□□□ -0.27
USF1P22415 AC022188.1-201ENST00000620960 1664 ntBASIC13.34□□□□□ -0.27
USF1P22415 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
USF1P22415 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
USF1P22415 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
USF1P22415 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
USF1P22415 AC005052.1-201ENST00000625181 2492 ntBASIC13.34□□□□□ -0.27
USF1P22415 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
USF1P22415 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC13.34□□□□□ -0.27
USF1P22415 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
USF1P22415 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
USF1P22415 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC13.34□□□□□ -0.27
USF1P22415 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
USF1P22415 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC13.34□□□□□ -0.27
USF1P22415 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
USF1P22415 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
USF1P22415 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
USF1P22415 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC13.34□□□□□ -0.27
USF1P22415 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC13.34□□□□□ -0.27
USF1P22415 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC13.34□□□□□ -0.27
USF1P22415 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC13.34□□□□□ -0.27
USF1P22415 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
USF1P22415 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC13.34□□□□□ -0.27
USF1P22415 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC13.34□□□□□ -0.27
USF1P22415 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC13.34□□□□□ -0.27
USF1P22415 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC13.34□□□□□ -0.27
USF1P22415 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
USF1P22415 SPIB-207ENST00000597855 564 ntTSL 4 BASIC13.34□□□□□ -0.27
USF1P22415 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
USF1P22415 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
USF1P22415 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
USF1P22415 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
USF1P22415 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
USF1P22415 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
USF1P22415 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
USF1P22415 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC13.34□□□□□ -0.27
USF1P22415 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
USF1P22415 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC13.34□□□□□ -0.27
USF1P22415 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
USF1P22415 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
USF1P22415 VWF-201ENST00000261405 8838 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
USF1P22415 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC13.34□□□□□ -0.27
USF1P22415 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC13.34□□□□□ -0.27
USF1P22415 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
USF1P22415 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC13.34□□□□□ -0.27
USF1P22415 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
USF1P22415 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
USF1P22415 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
USF1P22415 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
USF1P22415 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC13.34□□□□□ -0.27
USF1P22415 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
USF1P22415 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.27
USF1P22415 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
USF1P22415 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
USF1P22415 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC13.33□□□□□ -0.27
USF1P22415 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
USF1P22415 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC13.33□□□□□ -0.27
USF1P22415 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
USF1P22415 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
USF1P22415 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms