Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB1P09429 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB1P09429 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
HMGB1P09429 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
HMGB1P09429 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
HMGB1P09429 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
HMGB1P09429 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC18.49■□□□□ 0.55
HMGB1P09429 AMT-224ENST00000635808 1610 ntTSL 5 BASIC18.49■□□□□ 0.55
HMGB1P09429 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB1P09429 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
HMGB1P09429 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB1P09429 ASF1A-201ENST00000229595 2362 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB1P09429 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB1P09429 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB1P09429 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB1P09429 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB1P09429 AC148477.4-201ENST00000613430 1793 ntBASIC18.48■□□□□ 0.55
HMGB1P09429 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB1P09429 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
HMGB1P09429 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB1P09429 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC18.48■□□□□ 0.55
HMGB1P09429 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB1P09429 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB1P09429 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB1P09429 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB1P09429 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC18.48■□□□□ 0.55
HMGB1P09429 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC18.48■□□□□ 0.55
HMGB1P09429 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB1P09429 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC18.48■□□□□ 0.55
HMGB1P09429 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC18.48■□□□□ 0.55
HMGB1P09429 TIMM17BP1-201ENST00000545713 516 ntBASIC18.48■□□□□ 0.55
HMGB1P09429 AC092337.1-201ENST00000568699 1129 ntBASIC18.48■□□□□ 0.55
HMGB1P09429 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC18.48■□□□□ 0.55
HMGB1P09429 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB1P09429 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
HMGB1P09429 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB1P09429 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB1P09429 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB1P09429 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC18.48■□□□□ 0.55
HMGB1P09429 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB1P09429 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB1P09429 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC18.48■□□□□ 0.55
HMGB1P09429 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC18.48■□□□□ 0.55
HMGB1P09429 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
HMGB1P09429 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
HMGB1P09429 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC18.47■□□□□ 0.55
HMGB1P09429 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
HMGB1P09429 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB1P09429 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB1P09429 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC18.47■□□□□ 0.55
HMGB1P09429 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB1P09429 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB1P09429 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB1P09429 MFF-204ENST00000353339 2186 ntTSL 5 BASIC18.47■□□□□ 0.55
HMGB1P09429 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
HMGB1P09429 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB1P09429 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB1P09429 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB1P09429 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB1P09429 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
HMGB1P09429 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB1P09429 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC18.47■□□□□ 0.55
HMGB1P09429 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC18.47■□□□□ 0.55
HMGB1P09429 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC18.47■□□□□ 0.55
HMGB1P09429 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC18.47■□□□□ 0.55
HMGB1P09429 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB1P09429 AC144831.1-201ENST00000573312 2656 ntBASIC18.47■□□□□ 0.55
HMGB1P09429 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
HMGB1P09429 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB1P09429 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
HMGB1P09429 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB1P09429 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
HMGB1P09429 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB1P09429 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB1P09429 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
HMGB1P09429 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGB1P09429 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB1P09429 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC18.46■□□□□ 0.55
HMGB1P09429 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB1P09429 TMPRSS13-203ENST00000524993 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB1P09429 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC18.46■□□□□ 0.55
HMGB1P09429 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB1P09429 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
HMGB1P09429 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB1P09429 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC18.46■□□□□ 0.55
HMGB1P09429 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC18.46■□□□□ 0.55
HMGB1P09429 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC18.46■□□□□ 0.55
HMGB1P09429 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC18.46■□□□□ 0.55
HMGB1P09429 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC18.46■□□□□ 0.55
HMGB1P09429 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC18.46■□□□□ 0.55
HMGB1P09429 TBCB-211ENST00000589996 724 ntTSL 3 BASIC18.46■□□□□ 0.55
HMGB1P09429 AL645728.2-202ENST00000641679 227 ntBASIC18.46■□□□□ 0.55
HMGB1P09429 SLC9A7P1-201ENST00000554295 3311 ntBASIC18.46■□□□□ 0.55
HMGB1P09429 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB1P09429 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB1P09429 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB1P09429 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB1P09429 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB1P09429 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB1P09429 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms