Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL1A1P02452 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL1A1P02452 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC18.58■□□□□ 0.57
COL1A1P02452 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC18.58■□□□□ 0.57
COL1A1P02452 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC18.58■□□□□ 0.57
COL1A1P02452 KC6-205ENST00000599934 556 ntTSL 4 BASIC18.58■□□□□ 0.57
COL1A1P02452 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
COL1A1P02452 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC18.58■□□□□ 0.57
COL1A1P02452 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC18.58■□□□□ 0.57
COL1A1P02452 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.58■□□□□ 0.57
COL1A1P02452 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.58■□□□□ 0.57
COL1A1P02452 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL1A1P02452 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.58■□□□□ 0.57
COL1A1P02452 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL1A1P02452 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL1A1P02452 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL1A1P02452 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
COL1A1P02452 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL1A1P02452 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL1A1P02452 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL1A1P02452 THEG-202ENST00000346878 1211 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
COL1A1P02452 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL1A1P02452 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL1A1P02452 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL1A1P02452 MTX1P1-201ENST00000440904 838 ntBASIC18.58■□□□□ 0.56
COL1A1P02452 IGHJ2P-201ENST00000454480 60 ntBASIC18.58■□□□□ 0.56
COL1A1P02452 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL1A1P02452 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC18.58■□□□□ 0.56
COL1A1P02452 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC18.58■□□□□ 0.56
COL1A1P02452 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
COL1A1P02452 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC18.58■□□□□ 0.56
COL1A1P02452 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC18.58■□□□□ 0.56
COL1A1P02452 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
COL1A1P02452 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL1A1P02452 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
COL1A1P02452 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.58■□□□□ 0.56
COL1A1P02452 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL1A1P02452 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18.57■□□□□ 0.56
COL1A1P02452 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL1A1P02452 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL1A1P02452 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL1A1P02452 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC18.57■□□□□ 0.56
COL1A1P02452 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL1A1P02452 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL1A1P02452 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL1A1P02452 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL1A1P02452 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC18.57■□□□□ 0.56
COL1A1P02452 HARS-202ENST00000415192 1401 ntTSL 2 BASIC18.57■□□□□ 0.56
COL1A1P02452 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL1A1P02452 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL1A1P02452 MIR1202-201ENST00000408529 83 ntBASIC18.57■□□□□ 0.56
COL1A1P02452 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC18.57■□□□□ 0.56
COL1A1P02452 AC006003.1-201ENST00000448541 613 ntTSL 4 BASIC18.57■□□□□ 0.56
COL1A1P02452 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC18.57■□□□□ 0.56
COL1A1P02452 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL1A1P02452 SCARNA20.5-201ENST00000516991 142 ntBASIC18.57■□□□□ 0.56
COL1A1P02452 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
COL1A1P02452 EEF1DP1-201ENST00000585891 896 ntBASIC18.57■□□□□ 0.56
COL1A1P02452 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC18.57■□□□□ 0.56
COL1A1P02452 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC18.57■□□□□ 0.56
COL1A1P02452 DKFZP434H168-201ENST00000567381 1905 ntBASIC18.57■□□□□ 0.56
COL1A1P02452 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.57■□□□□ 0.56
COL1A1P02452 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC18.57■□□□□ 0.56
COL1A1P02452 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
COL1A1P02452 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL1A1P02452 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC18.57■□□□□ 0.56
COL1A1P02452 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
COL1A1P02452 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL1A1P02452 MST1L-201ENST00000442552 2185 ntBASIC18.57■□□□□ 0.56
COL1A1P02452 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
COL1A1P02452 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC18.57■□□□□ 0.56
COL1A1P02452 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
COL1A1P02452 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC18.57■□□□□ 0.56
COL1A1P02452 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.57■□□□□ 0.56
COL1A1P02452 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
COL1A1P02452 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL1A1P02452 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC18.56■□□□□ 0.56
COL1A1P02452 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
COL1A1P02452 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC18.56■□□□□ 0.56
COL1A1P02452 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL1A1P02452 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
COL1A1P02452 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL1A1P02452 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL1A1P02452 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL1A1P02452 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL1A1P02452 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC18.56■□□□□ 0.56
COL1A1P02452 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL1A1P02452 SLC9A7P1-202ENST00000556476 2239 ntBASIC18.56■□□□□ 0.56
COL1A1P02452 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC18.56■□□□□ 0.56
COL1A1P02452 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL1A1P02452 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL1A1P02452 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL1A1P02452 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL1A1P02452 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
COL1A1P02452 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL1A1P02452 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
COL1A1P02452 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC18.56■□□□□ 0.56
COL1A1P02452 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
COL1A1P02452 AC004898.1-201ENST00000451057 766 ntBASIC18.56■□□□□ 0.56
COL1A1P02452 AL591846.1-201ENST00000451736 433 ntBASIC18.56■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms