Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.25■□□□□ 0.03
TNFP01375 PDIA3P1-201ENST00000471856 1510 ntBASIC15.25■□□□□ 0.03
TNFP01375 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.25■□□□□ 0.03
TNFP01375 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
TNFP01375 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TNFP01375 AC024909.3-201ENST00000611513 2257 ntBASIC15.25■□□□□ 0.03
TNFP01375 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
TNFP01375 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TNFP01375 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.25■□□□□ 0.03
TNFP01375 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.25■□□□□ 0.03
TNFP01375 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC15.25■□□□□ 0.03
TNFP01375 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TNFP01375 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
TNFP01375 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TNFP01375 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.25■□□□□ 0.03
TNFP01375 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TNFP01375 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC15.25■□□□□ 0.03
TNFP01375 AL118508.1-201ENST00000613502 2345 ntBASIC15.25■□□□□ 0.03
TNFP01375 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
TNFP01375 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.25■□□□□ 0.03
TNFP01375 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.25■□□□□ 0.03
TNFP01375 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.24■□□□□ 0.03
TNFP01375 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC15.24■□□□□ 0.03
TNFP01375 LZTS1-201ENST00000265801 5459 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
TNFP01375 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.24■□□□□ 0.03
TNFP01375 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
TNFP01375 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.24■□□□□ 0.03
TNFP01375 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC15.24■□□□□ 0.03
TNFP01375 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC15.24■□□□□ 0.03
TNFP01375 AC007551.1-201ENST00000457394 519 ntBASIC15.24■□□□□ 0.03
TNFP01375 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC15.24■□□□□ 0.03
TNFP01375 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC15.24■□□□□ 0.03
TNFP01375 GAPDHP40-201ENST00000505218 1006 ntBASIC15.24■□□□□ 0.03
TNFP01375 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC15.24■□□□□ 0.03
TNFP01375 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC15.24■□□□□ 0.03
TNFP01375 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC15.24■□□□□ 0.03
TNFP01375 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC15.24■□□□□ 0.03
TNFP01375 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC15.24■□□□□ 0.03
TNFP01375 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.24■□□□□ 0.03
TNFP01375 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.24■□□□□ 0.03
TNFP01375 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC15.24■□□□□ 0.03
TNFP01375 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
TNFP01375 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 AL138799.1-201ENST00000448213 1675 ntBASIC15.24■□□□□ 0.03
TNFP01375 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
TNFP01375 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC15.24■□□□□ 0.03
TNFP01375 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC15.24■□□□□ 0.03
TNFP01375 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 TKT-202ENST00000423516 2075 ntTSL 2 BASIC15.24■□□□□ 0.03
TNFP01375 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.24■□□□□ 0.03
TNFP01375 AP003680.1-201ENST00000598970 3660 ntBASIC15.24■□□□□ 0.03
TNFP01375 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.24■□□□□ 0.03
TNFP01375 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.24■□□□□ 0.03
TNFP01375 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
TNFP01375 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TNFP01375 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
TNFP01375 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.23■□□□□ 0.03
TNFP01375 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC15.23■□□□□ 0.03
TNFP01375 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.23■□□□□ 0.03
TNFP01375 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC15.23■□□□□ 0.03
TNFP01375 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
TNFP01375 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.23■□□□□ 0.03
TNFP01375 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
TNFP01375 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC15.23■□□□□ 0.03
TNFP01375 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
TNFP01375 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC15.23■□□□□ 0.03
TNFP01375 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC15.23■□□□□ 0.03
TNFP01375 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC15.23■□□□□ 0.03
TNFP01375 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TNFP01375 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.23■□□□□ 0.03
TNFP01375 AC016694.1-201ENST00000434179 700 ntBASIC15.23■□□□□ 0.03
TNFP01375 AC119751.2-201ENST00000504529 210 ntBASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms