Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC18.62■□□□□ 0.57
MBD4O95243 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD4O95243 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD4O95243 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MBD4O95243 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MBD4O95243 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD4O95243 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD4O95243 AC132872.4-202ENST00000622924 2756 ntBASIC18.62■□□□□ 0.57
MBD4O95243 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MBD4O95243 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC18.62■□□□□ 0.57
MBD4O95243 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC18.62■□□□□ 0.57
MBD4O95243 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.62■□□□□ 0.57
MBD4O95243 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC18.62■□□□□ 0.57
MBD4O95243 U91328.1-201ENST00000437528 223 ntBASIC18.62■□□□□ 0.57
MBD4O95243 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC18.62■□□□□ 0.57
MBD4O95243 FUZ-207ENST00000526575 482 ntTSL 4 BASIC18.62■□□□□ 0.57
MBD4O95243 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC18.62■□□□□ 0.57
MBD4O95243 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD4O95243 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MBD4O95243 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD4O95243 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.62■□□□□ 0.57
MBD4O95243 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC18.62■□□□□ 0.57
MBD4O95243 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD4O95243 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD4O95243 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD4O95243 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD4O95243 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
MBD4O95243 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD4O95243 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
MBD4O95243 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
MBD4O95243 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC18.61■□□□□ 0.57
MBD4O95243 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC18.61■□□□□ 0.57
MBD4O95243 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 AC090616.6-203ENST00000579186 1945 ntBASIC18.61■□□□□ 0.57
MBD4O95243 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
MBD4O95243 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
MBD4O95243 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC18.61■□□□□ 0.57
MBD4O95243 AC007389.4-201ENST00000454674 793 ntBASIC18.61■□□□□ 0.57
MBD4O95243 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
MBD4O95243 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 DRAP1-208ENST00000532933 751 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 AC129507.3-201ENST00000571512 913 ntTSL 2 BASIC18.61■□□□□ 0.57
MBD4O95243 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
MBD4O95243 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC18.61■□□□□ 0.57
MBD4O95243 GPR39-203ENST00000622084 900 ntTSL 5 BASIC18.61■□□□□ 0.57
MBD4O95243 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
MBD4O95243 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
MBD4O95243 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
MBD4O95243 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MBD4O95243 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MBD4O95243 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC18.6■□□□□ 0.57
MBD4O95243 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MBD4O95243 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MBD4O95243 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
MBD4O95243 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
MBD4O95243 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC18.6■□□□□ 0.57
MBD4O95243 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.6■□□□□ 0.57
MBD4O95243 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
MBD4O95243 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MBD4O95243 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC18.6■□□□□ 0.57
MBD4O95243 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MBD4O95243 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MBD4O95243 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MBD4O95243 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MBD4O95243 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MBD4O95243 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
MBD4O95243 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
MBD4O95243 MXI1-205ENST00000393134 889 ntTSL 2 BASIC18.6■□□□□ 0.57
MBD4O95243 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC18.6■□□□□ 0.57
MBD4O95243 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MBD4O95243 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC18.6■□□□□ 0.57
MBD4O95243 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC18.6■□□□□ 0.57
MBD4O95243 AC008735.3-201ENST00000596646 500 ntBASIC18.6■□□□□ 0.57
MBD4O95243 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC18.6■□□□□ 0.57
MBD4O95243 AC005252.2-201ENST00000624630 1141 ntBASIC18.6■□□□□ 0.57
MBD4O95243 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC18.6■□□□□ 0.57
MBD4O95243 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
MBD4O95243 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
MBD4O95243 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC18.6■□□□□ 0.57
MBD4O95243 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms