Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
CDH9Q9ULB4 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDH9Q9ULB4 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
CDH9Q9ULB4 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CDH9Q9ULB4 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDH9Q9ULB4 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDH9Q9ULB4 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDH9Q9ULB4 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.52■□□□□ 0.23
CDH9Q9ULB4 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.52■□□□□ 0.23
CDH9Q9ULB4 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDH9Q9ULB4 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
CDH9Q9ULB4 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.52■□□□□ 0.23
CDH9Q9ULB4 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDH9Q9ULB4 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDH9Q9ULB4 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC16.52■□□□□ 0.23
CDH9Q9ULB4 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.52■□□□□ 0.23
CDH9Q9ULB4 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.23
CDH9Q9ULB4 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 AC084364.1-201ENST00000551967 1556 ntBASIC16.51■□□□□ 0.23
CDH9Q9ULB4 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 AC107373.2-201ENST00000607735 490 ntBASIC16.51■□□□□ 0.23
CDH9Q9ULB4 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CDH9Q9ULB4 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 APOA1-205ENST00000375329 927 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 ACTG1P3-201ENST00000431775 1114 ntBASIC16.5■□□□□ 0.23
CDH9Q9ULB4 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 PIGL-212ENST00000581006 554 ntTSL 4 BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 AC015936.2-201ENST00000593177 259 ntBASIC16.5■□□□□ 0.23
CDH9Q9ULB4 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 RPSAP52-203ENST00000622976 1023 ntBASIC16.5■□□□□ 0.23
CDH9Q9ULB4 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CDH9Q9ULB4 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
CDH9Q9ULB4 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms