Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 AL079307.3-201ENST00000556114 283 ntBASIC17.95■□□□□ 0.46
USP28Q96RU2 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC17.95■□□□□ 0.46
USP28Q96RU2 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC17.95■□□□□ 0.46
USP28Q96RU2 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC17.95■□□□□ 0.46
USP28Q96RU2 MIR6080-201ENST00000617359 66 ntBASIC17.95■□□□□ 0.46
USP28Q96RU2 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
USP28Q96RU2 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC17.95■□□□□ 0.46
USP28Q96RU2 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
USP28Q96RU2 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
USP28Q96RU2 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC17.95■□□□□ 0.46
USP28Q96RU2 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC17.95■□□□□ 0.46
USP28Q96RU2 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC17.95■□□□□ 0.46
USP28Q96RU2 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC17.95■□□□□ 0.46
USP28Q96RU2 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
USP28Q96RU2 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
USP28Q96RU2 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP28Q96RU2 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP28Q96RU2 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP28Q96RU2 AL035456.1-201ENST00000456064 1369 ntBASIC17.94■□□□□ 0.46
USP28Q96RU2 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP28Q96RU2 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
USP28Q96RU2 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC17.94■□□□□ 0.46
USP28Q96RU2 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP28Q96RU2 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USP28Q96RU2 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP28Q96RU2 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP28Q96RU2 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USP28Q96RU2 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP28Q96RU2 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC17.94■□□□□ 0.46
USP28Q96RU2 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC17.94■□□□□ 0.46
USP28Q96RU2 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USP28Q96RU2 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC17.94■□□□□ 0.46
USP28Q96RU2 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC17.94■□□□□ 0.46
USP28Q96RU2 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC17.94■□□□□ 0.46
USP28Q96RU2 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
USP28Q96RU2 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP28Q96RU2 CMC2-214ENST00000565925 640 ntTSL 5 BASIC17.94■□□□□ 0.46
USP28Q96RU2 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP28Q96RU2 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.94■□□□□ 0.46
USP28Q96RU2 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
USP28Q96RU2 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.94■□□□□ 0.46
USP28Q96RU2 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USP28Q96RU2 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP28Q96RU2 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC17.94■□□□□ 0.46
USP28Q96RU2 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
USP28Q96RU2 LINC01101-201ENST00000622953 1884 ntBASIC17.94■□□□□ 0.46
USP28Q96RU2 CA10-203ENST00000451037 3189 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP28Q96RU2 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC17.94■□□□□ 0.46
USP28Q96RU2 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP28Q96RU2 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP28Q96RU2 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC17.94■□□□□ 0.46
USP28Q96RU2 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
USP28Q96RU2 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
USP28Q96RU2 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC17.93■□□□□ 0.46
USP28Q96RU2 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC17.93■□□□□ 0.46
USP28Q96RU2 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USP28Q96RU2 GOLGA6L17P-202ENST00000614358 1398 ntBASIC17.93■□□□□ 0.46
USP28Q96RU2 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP28Q96RU2 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP28Q96RU2 MROH4P-201ENST00000431302 1578 ntBASIC17.93■□□□□ 0.46
USP28Q96RU2 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC17.93■□□□□ 0.46
USP28Q96RU2 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.93■□□□□ 0.46
USP28Q96RU2 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP28Q96RU2 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
USP28Q96RU2 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP28Q96RU2 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.93■□□□□ 0.46
USP28Q96RU2 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC17.93■□□□□ 0.46
USP28Q96RU2 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC17.93■□□□□ 0.46
USP28Q96RU2 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC17.93■□□□□ 0.46
USP28Q96RU2 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC17.93■□□□□ 0.46
USP28Q96RU2 MIR3687-2-201ENST00000577708 61 ntBASIC17.93■□□□□ 0.46
USP28Q96RU2 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC17.93■□□□□ 0.46
USP28Q96RU2 METTL23-205ENST00000588302 925 ntTSL 5 BASIC17.93■□□□□ 0.46
USP28Q96RU2 MIR3687-1-201ENST00000614492 61 ntBASIC17.93■□□□□ 0.46
USP28Q96RU2 AP001059.3-201ENST00000619053 235 ntBASIC17.93■□□□□ 0.46
USP28Q96RU2 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC17.93■□□□□ 0.46
USP28Q96RU2 AC013726.1-201ENST00000563747 2285 ntBASIC17.93■□□□□ 0.46
USP28Q96RU2 PPP1R21-201ENST00000281394 3137 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USP28Q96RU2 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
USP28Q96RU2 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC17.93■□□□□ 0.46
USP28Q96RU2 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
USP28Q96RU2 AJ011931.1-201ENST00000618749 2492 ntBASIC17.93■□□□□ 0.46
USP28Q96RU2 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
USP28Q96RU2 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP28Q96RU2 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
USP28Q96RU2 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC17.92■□□□□ 0.46
USP28Q96RU2 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms