Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VMP1Q96GC9 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
VMP1Q96GC9 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
VMP1Q96GC9 AL035456.1-201ENST00000456064 1369 ntBASIC15.13■□□□□ 0.01
VMP1Q96GC9 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
VMP1Q96GC9 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
VMP1Q96GC9 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
VMP1Q96GC9 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
VMP1Q96GC9 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VMP1Q96GC9 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
VMP1Q96GC9 GRAMD4P3-201ENST00000621665 1669 ntBASIC15.13■□□□□ 0.01
VMP1Q96GC9 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
VMP1Q96GC9 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.13■□□□□ 0.01
VMP1Q96GC9 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VMP1Q96GC9 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VMP1Q96GC9 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VMP1Q96GC9 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VMP1Q96GC9 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
VMP1Q96GC9 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VMP1Q96GC9 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC15.13■□□□□ 0.01
VMP1Q96GC9 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VMP1Q96GC9 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VMP1Q96GC9 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC15.13■□□□□ 0.01
VMP1Q96GC9 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.13■□□□□ 0.01
VMP1Q96GC9 PPP6R2P1-201ENST00000450880 1275 ntBASIC15.13■□□□□ 0.01
VMP1Q96GC9 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VMP1Q96GC9 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
VMP1Q96GC9 PTPRVP-202ENST00000490575 953 ntTSL 5 BASIC15.13■□□□□ 0.01
VMP1Q96GC9 AC069120.2-201ENST00000524091 540 ntBASIC15.13■□□□□ 0.01
VMP1Q96GC9 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC15.13■□□□□ 0.01
VMP1Q96GC9 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.13■□□□□ 0.01
VMP1Q96GC9 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC15.13■□□□□ 0.01
VMP1Q96GC9 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC15.13■□□□□ 0.01
VMP1Q96GC9 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC15.13■□□□□ 0.01
VMP1Q96GC9 AC061975.2-201ENST00000581722 295 ntBASIC15.13■□□□□ 0.01
VMP1Q96GC9 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.13■□□□□ 0.01
VMP1Q96GC9 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.13■□□□□ 0.01
VMP1Q96GC9 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VMP1Q96GC9 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC15.13■□□□□ 0.01
VMP1Q96GC9 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VMP1Q96GC9 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
VMP1Q96GC9 AC104581.4-201ENST00000623126 3052 ntBASIC15.13■□□□□ 0.01
VMP1Q96GC9 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VMP1Q96GC9 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
VMP1Q96GC9 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC15.13■□□□□ 0.01
VMP1Q96GC9 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.12■□□□□ 0.01
VMP1Q96GC9 AC026748.1-201ENST00000624349 3251 ntBASIC15.12■□□□□ 0.01
VMP1Q96GC9 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
VMP1Q96GC9 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC15.12■□□□□ 0.01
VMP1Q96GC9 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
VMP1Q96GC9 GCLC-201ENST00000229416 3813 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
VMP1Q96GC9 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
VMP1Q96GC9 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.12■□□□□ 0.01
VMP1Q96GC9 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.12■□□□□ 0.01
VMP1Q96GC9 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.12■□□□□ 0.01
VMP1Q96GC9 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
VMP1Q96GC9 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.12■□□□□ 0.01
VMP1Q96GC9 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
VMP1Q96GC9 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
VMP1Q96GC9 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.12■□□□□ 0.01
VMP1Q96GC9 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
VMP1Q96GC9 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC15.12■□□□□ 0.01
VMP1Q96GC9 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.12■□□□□ 0.01
VMP1Q96GC9 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC15.12■□□□□ 0.01
VMP1Q96GC9 AC026979.3-201ENST00000607315 403 ntBASIC15.12■□□□□ 0.01
VMP1Q96GC9 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
VMP1Q96GC9 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
VMP1Q96GC9 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC15.12■□□□□ 0.01
VMP1Q96GC9 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
VMP1Q96GC9 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
VMP1Q96GC9 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms