Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 AC124068.2-201ENST00000569473 1109 ntBASIC15.51■□□□□ 0.07
TTC28Q96AY4 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 PHF23-213ENST00000613632 850 ntTSL 5 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TTC28Q96AY4 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TTC28Q96AY4 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TTC28Q96AY4 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TTC28Q96AY4 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.51■□□□□ 0.07
TTC28Q96AY4 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
TTC28Q96AY4 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.5■□□□□ 0.07
TTC28Q96AY4 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.5■□□□□ 0.07
TTC28Q96AY4 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC15.5■□□□□ 0.07
TTC28Q96AY4 MAP3K6-201ENST00000357582 4136 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC15.5■□□□□ 0.07
TTC28Q96AY4 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 TREM2-202ENST00000373113 1044 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 FAM9C-202ENST00000380625 1122 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC15.5■□□□□ 0.07
TTC28Q96AY4 AC093826.1-201ENST00000508655 993 ntBASIC15.5■□□□□ 0.07
TTC28Q96AY4 SRP14-204ENST00000558720 780 ntTSL 2 BASIC15.5■□□□□ 0.07
TTC28Q96AY4 AC120498.5-201ENST00000561757 299 ntBASIC15.5■□□□□ 0.07
TTC28Q96AY4 AC098818.2-201ENST00000564925 2320 ntBASIC15.5■□□□□ 0.07
TTC28Q96AY4 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC15.5■□□□□ 0.07
TTC28Q96AY4 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 AP000357.2-201ENST00000633827 597 ntTSL 2 BASIC15.5■□□□□ 0.07
TTC28Q96AY4 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.5■□□□□ 0.07
TTC28Q96AY4 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.5■□□□□ 0.07
TTC28Q96AY4 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC15.5■□□□□ 0.07
TTC28Q96AY4 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
TTC28Q96AY4 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC15.5■□□□□ 0.07
TTC28Q96AY4 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC15.5■□□□□ 0.07
TTC28Q96AY4 AP001282.1-201ENST00000531301 1499 ntBASIC15.5■□□□□ 0.07
TTC28Q96AY4 UROD-201ENST00000246337 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
TTC28Q96AY4 FAU-201ENST00000279259 461 ntTSL 2 BASIC15.5■□□□□ 0.07
TTC28Q96AY4 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
TTC28Q96AY4 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 CFAP36-203ENST00000403007 759 ntTSL 2 BASIC15.5■□□□□ 0.07
TTC28Q96AY4 RPL3P5-201ENST00000441645 1232 ntBASIC15.5■□□□□ 0.07
TTC28Q96AY4 RBM4-207ENST00000506523 654 ntTSL 3 BASIC15.5■□□□□ 0.07
TTC28Q96AY4 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
TTC28Q96AY4 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
TTC28Q96AY4 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TTC28Q96AY4 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TTC28Q96AY4 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TTC28Q96AY4 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TTC28Q96AY4 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC15.49■□□□□ 0.07
TTC28Q96AY4 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
TTC28Q96AY4 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC15.49■□□□□ 0.07
TTC28Q96AY4 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TTC28Q96AY4 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
TTC28Q96AY4 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
TTC28Q96AY4 ODF3L1-201ENST00000332145 1196 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TTC28Q96AY4 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TTC28Q96AY4 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC15.49■□□□□ 0.07
TTC28Q96AY4 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TTC28Q96AY4 AC011479.1-202ENST00000591889 528 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
TTC28Q96AY4 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC15.49■□□□□ 0.07
TTC28Q96AY4 SIGLEC18P-201ENST00000602271 909 ntBASIC15.49■□□□□ 0.07
TTC28Q96AY4 AL450487.2-201ENST00000615934 407 ntBASIC15.49■□□□□ 0.07
TTC28Q96AY4 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
TTC28Q96AY4 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TTC28Q96AY4 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC15.49■□□□□ 0.07
TTC28Q96AY4 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC15.49■□□□□ 0.07
TTC28Q96AY4 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TTC28Q96AY4 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TTC28Q96AY4 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC15.49■□□□□ 0.07
TTC28Q96AY4 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TTC28Q96AY4 AC079328.2-201ENST00000561241 3354 ntBASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 480 ms