Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS52Q8N1B4 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.08■□□□□ 0.32
VPS52Q8N1B4 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS52Q8N1B4 MIR600HG-201ENST00000449175 5984 ntBASIC17.08■□□□□ 0.32
VPS52Q8N1B4 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VPS52Q8N1B4 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.08■□□□□ 0.32
VPS52Q8N1B4 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 AL691432.1-201ENST00000596308 1422 ntBASIC17.07■□□□□ 0.32
VPS52Q8N1B4 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 AC004987.2-201ENST00000395959 1148 ntBASIC17.07■□□□□ 0.32
VPS52Q8N1B4 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 ELP6-209ENST00000446787 894 ntTSL 3 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 RN7SL399P-201ENST00000471648 279 ntBASIC17.07■□□□□ 0.32
VPS52Q8N1B4 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 RPL28-206ENST00000558752 671 ntTSL 3 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 AC015936.2-201ENST00000593177 259 ntBASIC17.07■□□□□ 0.32
VPS52Q8N1B4 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VPS52Q8N1B4 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 PAM16-204ENST00000571941 674 ntTSL 3 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 AC010319.3-201ENST00000597028 470 ntBASIC17.06■□□□□ 0.32
VPS52Q8N1B4 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
VPS52Q8N1B4 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS52Q8N1B4 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS52Q8N1B4 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS52Q8N1B4 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms