Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AL360270.3-201ENST00000609118 1348 ntBASIC20.33■□□□□ 0.85
USP54Q70EL1 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC20.33■□□□□ 0.85
USP54Q70EL1 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
USP54Q70EL1 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
USP54Q70EL1 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
USP54Q70EL1 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
USP54Q70EL1 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
USP54Q70EL1 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
USP54Q70EL1 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
USP54Q70EL1 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC20.33■□□□□ 0.85
USP54Q70EL1 AC125604.1-201ENST00000496255 707 ntBASIC20.33■□□□□ 0.85
USP54Q70EL1 AC245884.6-201ENST00000515672 1067 ntBASIC20.33■□□□□ 0.85
USP54Q70EL1 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
USP54Q70EL1 RN7SL190P-201ENST00000582519 257 ntBASIC20.33■□□□□ 0.85
USP54Q70EL1 AC090164.2-201ENST00000611487 516 ntBASIC20.33■□□□□ 0.85
USP54Q70EL1 AP000346.4-201ENST00000614827 381 ntBASIC20.33■□□□□ 0.85
USP54Q70EL1 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC20.33■□□□□ 0.85
USP54Q70EL1 AC100757.4-201ENST00000626934 759 ntBASIC20.33■□□□□ 0.85
USP54Q70EL1 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC20.33■□□□□ 0.85
USP54Q70EL1 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
USP54Q70EL1 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
USP54Q70EL1 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
USP54Q70EL1 AC092127.1-201ENST00000567093 3455 ntBASIC20.33■□□□□ 0.84
USP54Q70EL1 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
USP54Q70EL1 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC20.33■□□□□ 0.84
USP54Q70EL1 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
USP54Q70EL1 AC090616.6-203ENST00000579186 1945 ntBASIC20.33■□□□□ 0.84
USP54Q70EL1 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC20.33■□□□□ 0.84
USP54Q70EL1 WT1-209ENST00000530998 2421 ntTSL 2 BASIC20.33■□□□□ 0.84
USP54Q70EL1 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC20.33■□□□□ 0.84
USP54Q70EL1 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
USP54Q70EL1 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
USP54Q70EL1 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
USP54Q70EL1 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC20.33■□□□□ 0.84
USP54Q70EL1 FKBP4P6-201ENST00000457486 1332 ntBASIC20.33■□□□□ 0.84
USP54Q70EL1 AL008718.2-201ENST00000609206 1313 ntBASIC20.33■□□□□ 0.84
USP54Q70EL1 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP54Q70EL1 NUDT1-203ENST00000356714 662 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP54Q70EL1 NPPA-201ENST00000376476 728 ntTSL 3 BASIC20.32■□□□□ 0.84
USP54Q70EL1 NUDT1-204ENST00000397046 712 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP54Q70EL1 CAMKMT-203ENST00000403853 1114 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP54Q70EL1 KRT18P36-201ENST00000411618 1276 ntBASIC20.32■□□□□ 0.84
USP54Q70EL1 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC20.32■□□□□ 0.84
USP54Q70EL1 TLE1P1-201ENST00000422965 589 ntBASIC20.32■□□□□ 0.84
USP54Q70EL1 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC20.32■□□□□ 0.84
USP54Q70EL1 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP54Q70EL1 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC20.32■□□□□ 0.84
USP54Q70EL1 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC20.32■□□□□ 0.84
USP54Q70EL1 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP54Q70EL1 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC20.32■□□□□ 0.84
USP54Q70EL1 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC20.32■□□□□ 0.84
USP54Q70EL1 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP54Q70EL1 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP54Q70EL1 SLC35G5-201ENST00000382435 1321 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
USP54Q70EL1 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
USP54Q70EL1 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC20.32■□□□□ 0.84
USP54Q70EL1 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP54Q70EL1 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP54Q70EL1 HINT2P1-201ENST00000419438 481 ntBASIC20.32■□□□□ 0.84
USP54Q70EL1 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC20.32■□□□□ 0.84
USP54Q70EL1 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP54Q70EL1 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC20.32■□□□□ 0.84
USP54Q70EL1 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC20.32■□□□□ 0.84
USP54Q70EL1 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC20.32■□□□□ 0.84
USP54Q70EL1 RANGRF-205ENST00000580434 749 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
USP54Q70EL1 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC20.32■□□□□ 0.84
USP54Q70EL1 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP54Q70EL1 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
USP54Q70EL1 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP54Q70EL1 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC20.31■□□□□ 0.84
USP54Q70EL1 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC20.31■□□□□ 0.84
USP54Q70EL1 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USP54Q70EL1 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USP54Q70EL1 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC20.31■□□□□ 0.84
USP54Q70EL1 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
USP54Q70EL1 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC20.31■□□□□ 0.84
USP54Q70EL1 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC20.31■□□□□ 0.84
USP54Q70EL1 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC20.31■□□□□ 0.84
USP54Q70EL1 THOC6-207ENST00000574549 1300 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USP54Q70EL1 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USP54Q70EL1 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP54Q70EL1 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC20.31■□□□□ 0.84
USP54Q70EL1 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
USP54Q70EL1 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
USP54Q70EL1 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC20.31■□□□□ 0.84
USP54Q70EL1 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
USP54Q70EL1 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC20.31■□□□□ 0.84
USP54Q70EL1 RN7SL720P-201ENST00000488178 304 ntBASIC20.31■□□□□ 0.84
USP54Q70EL1 HNRNPA1P36-201ENST00000521313 955 ntBASIC20.31■□□□□ 0.84
USP54Q70EL1 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC20.31■□□□□ 0.84
USP54Q70EL1 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC20.31■□□□□ 0.84
USP54Q70EL1 RN7SL774P-201ENST00000577467 290 ntBASIC20.31■□□□□ 0.84
USP54Q70EL1 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC20.31■□□□□ 0.84
USP54Q70EL1 AC003102.2-201ENST00000589195 1469 ntBASIC20.31■□□□□ 0.84
USP54Q70EL1 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
USP54Q70EL1 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP54Q70EL1 AP005117.1-202ENST00000581724 1908 ntBASIC20.3■□□□□ 0.84
USP54Q70EL1 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP54Q70EL1 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
USP54Q70EL1 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms